Table 1 Differentially Expressed Proteins identified inTSH1188

 96

ascorbate peroxidase [Theobroma cacao]

UP

1.614

O S

Ch P

45DAI

 177

Peroxidase superfamily protein [Theobroma cacao]

UP

3.583

O

A

45DAI

 1006

Class III peroxidase [Theobroma cacao]

DOWN

–

O

U

72HAI

 1052

2-cysteine peroxiredoxin B [Theobroma cacao]

DOWN

–

O S

A Ch

72HAI

 1005

Peroxidase 4

DOWN

–

O

U

72HAI

 1033

Chaperonin CPN60 2 mitochondrial

DOWN

–

P E N S O

C M V

72HAI

 1068

hypothetical protein CICLE_v10000948mg [Citrus clementina]

UP

–

O

Ch M

45DAI

 1104

ascorbate peroxidase [Theobroma cacao]

UP

–

O

P Ch

45DAI

 1122

Glyceraldehyde-3-phosphate dehydrogenase C2 isoform 2 [Theobroma cacao]

UP

–

E O S

C A Ch M N P

72HAI

 1123

Glyceraldehyde-3-phosphate dehydrogenase C2 isoform 1 [Theobroma cacao]

UP

–

E O S

C A Ch M N P

72HAI

 1129

Cationic peroxidase 2 precursor [Theobroma cacao]

UP

–

O

U

45DAI

 1224

Peroxidase [Theobroma cacao]

UP

–

O

V

45DAI

 1401

Class III peroxidase [Theobroma cacao]

UP

–

O

U

45DAI

 1421

Peroxidase superfamily protein [Theobroma cacao]

DOWN

–

S O

U

45DAI

 1432

Peroxidase superfamily protein isoform 1 [Theobroma cacao]

DOWN

–

O

U

45DAI

 1141

Cationic peroxidase 2 precursor [Theobroma cacao]

UP

–

O

U

45DAI

 1132

Cationic peroxidase 2 precursor [Theobroma cacao]

UP

–

O

U

45DAI

 1129

Cationic peroxidase 2 precursor [Theobroma cacao]

UP

–

O

U

45DAI

 1222

Peroxidase [Theobroma cacao]

UP

–

O

V

45DAI

 65

Superoxide dismutase [Theobroma cacao]

UP

1.926

O

M

45DAI

 17

Copper/zinc superoxide dismutase 2 isoform 1 [Theobroma cacao]

UP

2.129

S O

Ch A

45DAI

 1490

Peroxidase superfamily protein isoform 1 [Theobroma cacao]

DOWN

–

O

U

45DAI

 73

Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]

DOWN

1.761

Ph

Ch

45DAI

 1420

Phosphomannomutase [Theobroma cacao]

DOWN

–

E S P T

C

45DAI

 1128

6-phosphogluconate dehydrogenase family protein [Theobroma cacao]

UP

–

E N

U

45DAI

 1123

Glyceraldehyde-3-phosphate dehydrogenase C2 isoform 1 [Theobroma cacao]

UP

–

E O S

C A Ch M N P

72HAI

 1122

Glyceraldehyde-3-phosphate dehydrogenase C2 isoform 2 [Theobroma cacao]

UP

–

E O S

C A Ch M N P

72HAI

 398

Insulinase (Peptidase family M16) protein isoform 1 [Theobroma cacao]

UP

1.56

P E S

V M C N P

45DAI

 1411

Photosystem I subunit D-2 [Theobroma cacao]

DOWN

–

Ph

Ch

45DAI

 1138

Glycosyl hydrolase superfamily protein [Theobroma cacao]

UP

–

E S

V

45DAI

 1100

Ribulose bisphosphate carboxylase/oxygenase activase 1 isoform 1 [Theobroma cacao]

UP

–

S T E Ph O

Ch A

72HAI

 206

Aldolase superfamily protein isoform 1 [Theobroma cacao]

UP

1.802

S E

C N M Ch P A

45DAI

 353

Amidase family protein isoform 1 [Theobroma cacao]

DOWN

3.979

E

U

45DAI

 64

Light-harvesting chlorophyll B-binding protein 3 [Theobroma cacao]

DOWN

2.003

Ph E

Ch

45DAI

 1009

Lactate/malate dehydrogenase family protein [Theobroma cacao]

DOWN

–

E S N

A Ch M

72HAI

 1039

Phosphoglycerate kinase 1 [Theobroma cacao]

UP

–

E S O N

M C A Ch

45DAI

 1038

Sedoheptulose-bisphosphatase [Theobroma cacao]

UP

–

S E T O

Ch

45DAI

 1302

Glycosyl hydrolase family 38 protein isoform 1 [Theobroma cacao]

UP

–

E

V A

45DAI

 94

Chlorophyll a-b binding protein, chloroplastic [Theobroma cacao]

DOWN

2.291

Ph

Ch

45DAI

 1106

Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]

UP

–

E

U

72HAI

 1488

hypothetical protein CICLE_v10012049mg [Citrus clementina]

DOWN

–

E S

M A N C P Ch

45DAI

 1138

Putative uncharacterized protein

UP

–

S E

Ch P

72HAI

 1120

Putative Beta xylosidase alpha L arabinofuranosidase 2

UP

–

E

U

72HAI

 1057

putative miraculin-like protein 2 [Citrus hybrid cultivar]

UP

–

S

U

45DAI

 381

Voltage dependent anion channel 2 [Theobroma cacao]

UP

1.792

E S

M V Ch

72HAI

 1127

Voltage dependent anion channel 2 [Theobroma cacao]

UP

–

E S

M Ch P V

45DAI

 1321

Heat shock protein 89.1 isoform 1 [Theobroma cacao]

UP

–

P S

Ch M

45DAI

 1037

Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]

UP

–

S E

P

45DAI

 1102

Chitinase A [Theobroma cacao]

UP

–

E S

A

72HAI

 1071

21 kDa seed protein, putative [Theobroma cacao]

UP

–

S,E

A P

45DAI

 1284

Mitochondrial HSO70 2 isoform 2 [Theobroma cacao]

UP

–

P N S O

M P Ch V

45DAI

 1146

Prohibitin 2 [Theobroma cacao]

UP

–

S E

V M Ch

45DAI

 16

MLP-like protein 28 [Theobroma cacao]

DOWN

1.69

S

N Ch

45DAI

 389

Voltage dependent anion channel 1 [Theobroma cacao]

UP

1.646

E S

M V N Ch P

72HAI

 224

Chloroplast heat shock protein 70 isoform 1 [Theobroma cacao]

UP

7.391

P S

M Ch N A

45DAI

 1125

Carrot EP3–3 chitinase, putative isoform 1 [Theobroma cacao]

UP

–

E S

A

45DAI

 1036

Pathogenesis-related protein 10.5 [Theobroma cacao]

UP

–

S

U

45DAI

 1042

Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]

UP

–

S E

P

45DAI

 1052

2-cysteine peroxiredoxin B [Theobroma cacao]

DOWN

–

O S

A Ch

72HAI

 1431

Pathogenesis-related protein P2 isoform 1 [Theobroma cacao]

DOWN

–

S

C

45DAI

 1065

Pathogenesis-related protein P2 isoform 1 [Theobroma cacao]

DOWN

–

S

U

72HAI

 1170

Pathogenesis-related protein P2 isoform 2, partial [Theobroma cacao]

UP

–

S

C

45DAI

 1065

Pathogenesis-related protein PR-4B [Theobroma cacao]

UP

–

S

U

45DAI

 52

Abscisic stress ripening protein [Theobroma cacao]

DOWN

8.911

S

U

45DAI

 974

21 kDa seed protein [Theobroma cacao]

DOWN

–

S,E

A P

72HAI

 39

21 kDa seed protein [Theobroma cacao]

DOWN

2.013

S,E

A P

45DAI

 1051

21 kDa seed protein [Theobroma cacao]

UP

–

S,E

A P

45DAI

 40

21 kDa seed protein [Theobroma cacao]

DOWN

3.559

S,E

A P

45DAI

 1073

Osmotin 34 [Theobroma cacao]

UP

–

S

A

45DAI

 1060

Osmotin 34 [Theobroma cacao]

UP

–

S

A

45DAI

 1040

17.6 kDa class II heat shock protein [Theobroma cacao]

UP

–

S P

C

45DAI

 417

TCP-1/cpn60 chaperonin family protein [Theobroma cacao]

DOWN

1.789

E P S

Ch A N P C

45DAI

 1135

class I chitinase [Theobroma cacao]

UP

–

S E T

P V

45DAI

 1072

Thaumatin-like protein

UP

–

S

A

45DAI

 1033

Chaperonin CPN60 2 mitochondrial

DOWN

–

P E N S O

C M V

72HAI

 381

Voltage dependent anion channel 2 [Theobroma cacao]

UP

1.792

E S

M V Ch

45DAI

 1065

Pathogenesis-related protein P2 isoform 1 [Theobroma cacao]

Up

–

S

U

45DAI