Table 4 The genome areas identified to be rich in indels among the twelve acquired chloroplast genomes. Genome areas that have more than 5 indels per 500 bp are considered to be rich in indels
Genome position | Count | Region | Genomic context | Content |
|---|---|---|---|---|
57,000–57,500 | 11 | LSC | trnQ-UUG~accD | spacer |
115,500–116,000 | 11 | SSC | rpl32~trnL-UAG; trnL-UAG; trnL-UAG~ccsA | spacer; coding; spacer |
66,000–66,500 | 10 | LSC | psbE~petL | spacer |
123,000–123,500 | 8 | SSC | ndhA | coding |
112,000–112,500 | 7 | IRa;SSC | trnN-GUU~ndhF;ndhF | spacer; coding |
53,000–53,500 | 6 | LSC | trnR-UCU; trnR-UCU~trnS-GCU | coding; spacer |
53,500–54,000 | 6 | LSC | trnR-UCU~trnS-GCU | coding |
56,000–56,500 | 6 | LSC | psbK; psbK~trnQ-UUG | coding; spacer |
10,000–10,500 | 5 | LSC | trnV-UAC; trnV-UAC~ndhC | coding; spacer |
13,000–13,500 | 5 | LSC | ndhJ~trnF-GAA; trnF-GAA; trnF-GAA~trnL-UAA | spacer; coding; spacer |
29,500–30,000 | 5 | LSC | psbD~trnF-GGU | spacer |
69,000–69,500 | 5 | LSC | rps18; rps18~rps20 | coding; spacer |
115,000–115,500 | 5 | SSC | rpl32; rpl32~trnL-UAG | coding; spacer |
119,500–120,000 | 5 | SSC | psaC~ndhE; ndhE~ndhG | spacer; spacer |