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Table 2 Significant associations between single nucleotide polymorphism (SNP) markers and Watkins LCs response to two major leaf spot diseases (tan spot Ptr race 1, race 5, and SNB)

From: Mining and genomic characterization of resistance to tan spot, Stagonospora nodorum blotch (SNB), and Fusarium head blight in Watkins core collection of wheat landraces

TraitQTLs (SNP markers)AlleleChrGenetic position (cMa)Physical position (Mbp)P-valueR 2
PTR1Q.Ts1.sdsu-1AL (AX-94510190)C/T1AL182.2536.430.00040.16
Q.Ts1.sdsu-1AL (AX-94932688)C/T1AL267.2589.020.00090.14
Q.Ts1.sdsu-2BS (AX-94748285)A/T2BS3.16.310.00010.18
Q.Ts1.sdsu-3AS (AX-94591588)C/T3AS1.920.000.00100.14
Q.Ts1.sdsu-3BL (AX-94967827)G/T3BL202.7798.550.00050.16
Q.Ts1.sdsu-4AL (AX-94662401)C/T4AL107.3543.740.00080.15
Q.Ts1.sdsu-4BS (AX-95190182)C/G4BS-*4.990.00050.16
Q.Ts1.sdsu-5AL (AX-94462650)A/G5AL373.0671.390.00030.16
Q.Ts1.sdsu-5BS (AX-95684251)A/C5BS15.713.430.00050.16
Q.Ts1.sdsu-5BL (AX-95252159)C/T5BL166.7568.820.00100.14
PTR5Q.Ts5.sdsu-1BL (AX-94399951)C/T1BL50.4352.390.00040.19
Q.Ts5.sdsu-2DL (AX-94570302)G/T2DL216.1413.780.00040.19
Q.Ts5.sdsu-3AL (AX-94701190)A/G3AL198.2719.760.00090.17
Q.Ts5.sdsu-5BL (AX-94589119)G/T5BL55.3314.300.00020.20
Q.Ts5.sdsu-6BL (AX-94950339)C/G6BL165.2678.740.00070.18
SNBQ.Snb.sdsu-2BS (AX-94413492)A/G2BS89.1238.500.00080.20
Q.Snb.sdsu-5AL (AX-94758045)C/T5AL116.6472.340.00040.21
Q.Snb.sdsu-5BL (AX-94394626)G/T5BL210.8638.830.00020.22
Q.Snb.sdsu-5BL (AX-94878132)C/T5BL243.0679.130.00050.21
Q.Snb.sdsu-7AS (AX-94424444)C/T7AS29.953.260.00020.23
  1. a The cM position is based on individual genetic maps (Allen et al. 2017) * No genetic position is available