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Table 1 Parameters of the genetic variability of the 782 accessions from the western-to-eastern areas of southern Europe, across the 33 loci

From: Diversification and genetic structure of the western-to-eastern progression of European Phaseolus vulgaris L. germplasm

Locus

Expected heterozygosity (He)

Polymorphic information content

Allelic richness (Ar)

Number of effective alleles (Ne)

Shannon’s information index (I)

Fixation index (F)

ATA003*a

0.879

0.867

27.709

8.212

2.446

0.198

ATA004*a

0.849

0.834

24.000

6.551

2.326

0.362

ATA005*a

0.843

0.828

30.132

6.362

2.392

−0.040

ATA007*a

0.804

0.779

24.845

5.080

2.040

0.663

ATA016*a

0.790

0.762

17.147

4.752

1.873

−0.066

GATS91*c

0.928

0.923

32.292

13.749

2.890

−0.060

ATA002*a

0.858

0.845

30.798

6.982

2.452

0.044

BM172*c

0.894

0.885

35.118

9.411

2.686

0.097

BMd001*b

0.923

0.917

43.451

12.801

2.944

0.019

ATA020*a

0.882

0.872

34.052

8.422

2.596

0.288

Pv-ag004*i

0.845

0.828

26.295

6.432

2.287

−0.100

SSR-IAC167**h

0.585

0.542

12.735

2.405

1.215

0.116

ATA010*a

0.825

0.802

14.617

5.690

1.986

0.435

BM155*c

0.741

0.694

9.139

3.847

1.447

−0.168

BM170*c

0.889

0.879

27.770

8.960

2.537

−0.060

BM183*c

0.724

0.682

14.747

3.610

1.601

−0.285

BM210*c

0.540

0.434

5.402

2.172

0.867

−0.794

BMd044*b

0.762

0.726

13.088

4.187

1.667

0.236

ATA009*a

0.901

0.893

23.516

10.083

2.593

0.179

ATA145*a

0.796

0.781

22.613

4.888

2.162

0.431

GA16*a

0.855

0.837

15.225

6.858

2.110

0.090

ATA006*a

0.912

0.905

23.074

11.346

2.642

0.085

BM157*c

0.813

0.788

14.464

5.345

1.938

0.461

BMd042*b

0.857

0.842

24.054

6.977

2.312

−0.104

ATA289*a

0.773

0.743

20.694

4.391

1.861

−0.239

PvSHP1-A***d

0.855

0.839

17.111

6.868

2.195

−0.138

PvSHP1-B***d

0.856

0.838

16.937

6.911

2.093

−0.132

PvSHP1C***d

0.849

0.833

16.159

6.615

2.173

−0.004

PvM04**f

0.734

0.705

14.745

3.752

1.727

0.359

PvM21**f

0.753

0.724

17.757

4.047

1.752

−0.279

PvM95**g

0.779

0.752

28.173

4.511

1.980

−0.208

SSR-IAC62**e

0.930

0.925

32.777

14.137

2.892

0.073

SSR-IAC66**e

0.895

0.885

40.677

9.449

2.671

−0.061

Mean values

0.822

0.800

22.767

6.842

2.162

0.042

  1. *marker to assess diversity levels; **trait related marker; *** marker related to gene pool assignment; aBlair et al., [37]; bBlair et al. [38]; cGaitan-Solis et al. [39]; dNanni et al. [9]; eBenchimol et al. [40]; fHanai et al. [41]; gHanai et al. [42]; hCampos et al. [43]; iYu et al. [44]
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BMC Plant Biology

ISSN: 1471-2229

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