Skip to main content

Table 3 Detection of frame shift mutation in varieties with different Al tolerance

From: Mining candidate gene for rice aluminum tolerance through genome wide association study and transcriptomic analysis

Candidate geneVarieties with different Al tolerancePosition from the initial codon in CDS regionCodonAmino acid
LOC_Os01g57350.1Nipponbare182ndCAGGlutamine
KasalathGAGGlutamic acid
Nipponbare261stTACTyrosine
KasalathCACHistidine
LOC_Os03g30060.1Nipponbare20thAAGLysine
KasalathCAGGlutamine
Nipponbare66thGCCAlanine
KasalathACCThreonine
Nipponbare88thGTGValine
KasalathATGMethionine
Nipponbare125thGCAAlanine
KasalathGGAGlycine
Nipponbare126thGCGAlanine
KasalathTCGSerine
Nipponbare155thAACAsparagine
KasalathAGCSerine
Nipponbare184thGCGAlanine
KasalathACGThreonine
Nipponbare220thCAGGlutamine
KasalathGAGGlutamic acid
Nipponbare246thGCCAlanine
KasalathDeletionDeletion
Nipponbare260thATGMethionine
KasalathGTGValine
Nipponbare276thATCIsoleucine
KasalathGTCValine
Nipponbare277thGCGAlanine
KasalathACGThreonine
LOC_Os07g03050.1Nipponbare7thTATTyrosine
KasalathTCTSerine
Nipponbare344thTGTCysteine
KasalathAGTSerine
LOC_Os01g57360.1Nipponbare32ndAAGLysine
IR64AATAsparagine
Nipponbare348thGGCGlycine
IR64TGCCysteine
LOC_Os11g03110.1Nipponbare261st~269thDeletionDeletion
KasalathInsertionInsertion
Nipponbare608thGTGValine
KasalathGCGAlanine
LOC_Os01g74200.1Nipponbare12thTCGCysteine
IR64TCASerine
LOC_Os09g33550.1Nipponbare50thCACHistidine
IR64CCCProline
Nipponbare58thGCGAlanine
IR64ACGThreonine
Nipponbare65thGCGAlanine
IR64GTGValine