Fig. 3

Genome wide association mapping of plant height. a Manhattan plot of the single plant genome-wide association analysis (sp-GWAS) using FarmCPU. GWAS identified total of 25 significant SNPs for plant height that surpassed the significance threshold (P ≤ 0.00001). b Manhattan plot of the bulk segregant analysis (BSA) sequencing method for mapping plant height. BSA identified 37 significant regions (0.5% outlier). Red horizontal lines denote the significance threshold both for sp-GWAS and BSA. The overlapping SNPs in both GWAS and BSA is highlighted in red dots and the gene containing those three SNPs are highlighted and are aligned by blue dashed line