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Table 1 Characterization of AGO, DCL and RDR genes in Citrus sinensis

From: Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

  Gene Name Gene ID Phytozome Gene ID CSAP Location Protein
ORF length (bp) Length (AA) PI Mw (Da)
DCL CsDCL1 orange1.1g000174m orange1.1 t00584 ChrUn: 6828329–6,838,566 (− strand) 5892 1963 5.96 219,934
CsDCL2a orange1.1g000607m Cs6g03520 Chr6: 3969936–3,982,992 (− strand) 4191 1396 7.65 158,488
CsDCL2b orange1.1g003062m Cs6g03500 Chr6: 3910063–3,922,849 (− strand) 4206 1401 6.48 158,770
CsDCL3 orange1.1g000379m Cs4g06370 Chr4: 3914566–3,925,649 (+ strand) 4959 1652 7.95 184,339
CsDCL4 orange1.1g000380m Cs4g01340 Chr4: 255555–267,608 (+ strand) 4902 1633 6.47 183,256
RDR CsRDR1a orange1.1g002586m Cs2g17570 Chr2: 14327852–14,333,995 (+ strand) 3399 1132 7.13 129,642
CsRDR1b orange1.1g003789m Cs5g14110 Chr5: 11659292–11,663,430 (− strand) 3249 1082 6.04 122,608
CsRDR1c orange1.1g035741m Scaffold00168–67,689 – 71,577 (− strand) 2910 969 8.58 110,376
CsRDR2 orange1.1g001183m Cs5g05170 Chr5: 3069393–3,074,020 (+ strand) 3396 1131 6.59 128,958
CsRDR31 orange1.1g001771m Cs4g15260 Chr4: 14278137–14,289,339 (+ strand) 3048 1015 6.8 115,671
CsRDR6a orange1.1g041430m Cs7g05350 Chr7: 2849984–2,855,672 (+ strand) 3594 1197 6.13 136,437
CsRDR6b2 orange1.1g048783m Cs1g14730 Chr1: 18022840–18,027,238 (+ strand) 3501 1166 6.01 132,490
AGO CsAGO1 orange1.1g001466m Cs5g16710 Chr5: 15851375–15,859,311 (− strand) 3222 1073 9.38 118,338
CsAGO2a orange1.1g012649m Cs2g10760 Chr2: 8058870–8,063,724 (+ strand) 2946 981 9.29 110,071
CsAGO2b Cs2g10770 Chr2: 8075960–8,080,634 (+ strand) 2946 981 9.26 110,304
CsAGO4a orange1.1g002449m Cs2g29070 Chr2: 28612071–28,619,504 (− strand) 2763 920 8.98 102,998
CsAGO4b orange1.1g002636m Cs3g06860 Chr3: 9639528–9,647,482 (+ strand) 2697 898 9.43 100,950
CsAGO5a1 orange1.1g002204m Cs7g17940 Chr7: 13746350–13,751,613 (− strand) 2865 954 9.27 106,773
CsAGO5b2 orange1.1g003630m Cs7g17970 Chr7: 13774473–13,781,129 (− strand) 2847 948 9.50 105,299
CsAGO5c2 Cs7g17930 Chr7: 13732122–13,738,824 (− strand) 3021 1006 9.28 112,004
CsAGO5d Cs6g14430 Chr6: 15643144–15,650,122 (− strand) 2688 895 9.23 99,978
CsAGO6 orange1.1g002661m Cs2g20520 Chr2: 17331361–17,339,897 (− strand) 2688 895 9.41 100,500
CsAGO6-like2 orange1.1g048669m Cs6g16080 Chr6: 17010270–17,016,001 (− strand) 2814 937 9.71 105,659
CsAGO7 orange1.1g001684m Cs7g03360 Chr7: 1453333–1,457,453 (− strand) 3093 1030 9.24 117,036
CsAGO10 orange1.1g001954m Cs9g07740 Chr9: 4853982–4,862,787 (− strand) 2979 992 9.34 111,516
  1. 1 Phytozome gene structural annotation used
  2. 2 Updated gene structural annotation