Genome-wide association and differential expression analysis of salt tolerance in Gossypium hirsutum L at the germination stage

Table 5 The differential expression of the putative genes detected in both GWAS and transcriptome sequencing

Gene_id	readcount_H3	readcount_S3	log2FoldChange	p value	readcount_H24	readcount_S24	log2FoldChange	p value	readcount_H72	readcount_S72	log2FoldChange	p value
Gh_A01G1563	40.232	78.450	0.963	0.261	4.001	51.024	3.673	0.000*	0.000	5.109	+∞	0.316
Gh_A02G1100	4.161	26.612	2.677	0.001*	2.994	2.954	−0.020	1.000	5.117	1.099	−2.219	0.297
Gh_A03G1740	587.138	96.274	−2.608	0.000*	322.348	67.547	−2.255	0.000*	38.368	24.008	−0.676	0.246
Gh_A07G0622	180.915	912.736	2.335	0.000*	185.769	1681.857	3.178	0.000*	130.525	1972.522	3.918	0.000*
Gh_A07G0623	24.501	51.165	1.062	0.036	48.834	79.571	0.704	0.403	32.992	79.503	1.269	0.004*
Gh_A12G0877	10.051	4.262	−1.238	0.306	27.855	0.484	−5.848	0.000*	25.105	3.719	−2.755	0.002*
Gh_D07G0243	63.337	213.505	1.753	0.000*	115.184	114.475	− 0.009	0.990	88.638	69.300	−0.355	0.441
Gh_D07G0249	1.579	0.444	−1.830	0.771	4.501	3.006	−0.582	0.834	2.439	77.211	4.984	0.000*
Gh_D07G0250	3.196	39.993	3.645	0.004*	0.501	4.404	3.137	0.205	7.333	4.395	−0.738	0.621
Gh_D07G0251	193.354	458.100	1.244	0.019	189.755	242.694	0.355	0.564	192.524	376.097	0.966	0.002*
Gh_D07G0258	220.517	323.412	0.552	0.060	141.005	164.415	0.222	0.586	95.896	206.969	1.110	0.002*
Gh_D07G0263	41.671	152.914	1.876	0.000*	25.937	198.357	2.935	0.000*	279.158	178.035	−0.649	0.043
Gh_D07G0500	37.958	426.805	3.491	0.000*	37.418	163.250	2.125	0.000*	262.034	249.357	−0.072	0.846

ISSN: 1471-2229