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Table 3 Candidate genes belong to categories related to salt tolerance

From: Genome-wide association and differential expression analysis of salt tolerance in Gossypium hirsutum L at the germination stage

Category Gene ID Gene Name Description TF Family/Stress/Signal/Ion transport
Transcription factors Gh_A01G1562 COL16 Zinc finger protein CONSTANS-LIKE 16 CO-like
Gh_A01G1564 MYB108 Transcription factor MYB108 MYB
Gh_A03G1731 BZIP53 bZIP transcription factor 53 bZIP
Gh_A03G1738 BLH6 BEL1-like homeodomain protein 6 TALE
Gh_A12G0867 SPL8 Squamosa promoter-binding-like protein 8 SBP
Gh_A12G0870 ERF034 Ethylene-responsive transcription factor ERF034 ERF
Gh_A12G0871 HAT3 Homeobox-leucine zipper protein HAT3 HD-ZIP
Gh_A12G0875 ERF13 Ethylene-responsive transcription factor 13 ERF
Gh_A12G0876 ERF13 Ethylene-responsive transcription factor 13 ERF
Gh_A12G0877 ERF2 Ethylene-responsive transcription factor 2 ERF
Gh_D07G0251 ARR12 Two-component response regulator ARR12 ARR-B
Response to stress or defense response Gh_A01G1563 CUT1 3-ketoacyl-CoA synthase 6 Cold
Gh_A03G1732 AT2G16385 CIF1:Proteincasparlan strip integrity factor 1 Acidic pH
Gh_A03G1733 AT4G39130 Late embryogenesis abundant protein Stress, Water
Gh_A07G0622 CLPB1 Chaperone protein ClpB1 Heat, Hydrogen peroxide
Gh_A07G0624 DGK1 Diacylglycerol kinase 1 Defense response
Gh_A12G0875 ERF13 Ethylene-responsive transcription factor 13 Defense response
Gh_A12G0876 ERF13 Ethylene-responsive transcription factor 13 Defense response
Gh_A12G0877 ERF2 Ethylene-responsive transcription factor 2 Defense response
Gh_D07G0240 KAT3 Potassium channel KAT3 Nematode
Gh_D07G0244 EDR2L Protein enhanced disease resistance 2-like Defense response
Gh_D07G0246 CHIA Acidic mammalian chitinase Immune system process
Gh_D07G0248 CHIT1 Chitotriosidase-1 Immune response
Gh_D07G0249 CHIT1 Chitotriosidase-1 Immune response
Gh_D07G0251 ARR12 Two-component response regulator ARR12 Water deprivation
Gh_D07G0252 NKS1 Ubiquitin-associated protein (DUF1068) Hyperosmotic salinity
Gh_D07G0256 TIL Temperature-induced lipocalin-1 Hyperosmotic salinity, Cold, Freezing, Heat, Paraquat, Water deprivation
Gh_D07G0500 HVA22E HVA22-like protein e Hyperosmotic salinity, Cold, Water deprivation
Signaling or response to signal factors Gh_A01G1564 MYB108 Transcription factor MYB108 Gibberellic acid, Jasmonic acid
Gh_A02G1099 WAK2 Wall-associated receptor kinase 2 Salicylic acid
Gh_A02G1100 WAK2 Wall-associated receptor kinase 2 Salicylic acid
Gh_A07G0624 DGK1 Diacylglycerol kinase 1 Intracellular signal transduction
Gh_A07G0729 RALFL27 Protein RALF-like 27 Calcium mediated signaling, Cell-cell signaling
Gh_D07G0251 ARR12 Two-component response regulator ARR12 Cytokinin
Gh_D07G0256 TIL Temperature-induced lipocalin-1 Cytokinin
Gh_D07G0500 HVA22E HVA22-like protein e Abscisic acid
Gh_D10G0643 IAA27 Auxin-responsive protein IAA27 Auxin
Ion homeostasis or ion transport Gh_A03G1732 AT2G16385 CIF1:Proteincasparlan strip integrity factor 1 Ion homeostasis
Gh_D07G0240 KAT3 Potassium channel KAT3 Potassium ion transmembrane transport, Regulation of ion transmembrane transport, Regulation of membrane potential
Gh_D07G0252 NKS1 Ubiquitin-associated protein (DUF1068) Vacuolar sequestering of sodium ion
Gh_D07G0254 MOT1 Molybdate transporter 1 Molybdate ion transmembrane transporter activity, Molybdate ion transport
Gh_D07G0255 MOT1 Molybdate transporter 1 Molybdate ion transmembrane transporter activity, Molybdate ion transport
Gh_D07G0256 TIL Temperature-induced lipocalin-1 Cellular chloride ion homeostasis, Cellular sodium ion homeostasis
Fatty acid Gh_A01G1563 CUT1 3-ketoacyl-CoA synthase 6 Fatty acid biosynthetic process
Amino acid Gh_D07G0242 PROC Pyrroline-5-carboxylate reductase Proline biosynthetic process, Pyrroline-5-carboxylate reductase activity
Gh_A03G1734 HISN7 Bifunctional phosphatase IMPL2, chloroplastic Histidine biosynthetic process, Inositol biosynthetic process, Phosphatidylinositol phosphorylation
Gh_A03G1737 SAE2 SUMO-activating enzyme subunit 2 Acid-amino acid ligase activity
Gh_D08G0928 GDU2 Protein GLUTAMINE DUMPER 2 Amino acid transport
Gh_D08G0929 GDU3 Protein GLUTAMINE DUMPER 3 Amino acid transport