Table 3 Candidate genes belong to categories related to salt tolerance

Transcription factors

Gh_A01G1562

COL16

Zinc finger protein CONSTANS-LIKE 16

CO-like

Gh_A01G1564

MYB108

Transcription factor MYB108

MYB

Gh_A03G1731

BZIP53

bZIP transcription factor 53

bZIP

Gh_A03G1738

BLH6

BEL1-like homeodomain protein 6

TALE

Gh_A12G0867

SPL8

Squamosa promoter-binding-like protein 8

SBP

Gh_A12G0870

ERF034

Ethylene-responsive transcription factor ERF034

ERF

Gh_A12G0871

HAT3

Homeobox-leucine zipper protein HAT3

HD-ZIP

Gh_A12G0875

ERF13

Ethylene-responsive transcription factor 13

ERF

Gh_A12G0876

ERF13

Ethylene-responsive transcription factor 13

ERF

Gh_A12G0877

ERF2

Ethylene-responsive transcription factor 2

ERF

Gh_D07G0251

ARR12

Two-component response regulator ARR12

ARR-B

Response to stress or defense response

Gh_A01G1563

CUT1

3-ketoacyl-CoA synthase 6

Cold

Gh_A03G1732

AT2G16385

CIF1:Proteincasparlan strip integrity factor 1

Acidic pH

Gh_A03G1733

AT4G39130

Late embryogenesis abundant protein

Stress, Water

Gh_A07G0622

CLPB1

Chaperone protein ClpB1

Heat, Hydrogen peroxide

Gh_A07G0624

DGK1

Diacylglycerol kinase 1

Defense response

Gh_A12G0875

ERF13

Ethylene-responsive transcription factor 13

Defense response

Gh_A12G0876

ERF13

Ethylene-responsive transcription factor 13

Defense response

Gh_A12G0877

ERF2

Ethylene-responsive transcription factor 2

Defense response

Gh_D07G0240

KAT3

Potassium channel KAT3

Nematode

Gh_D07G0244

EDR2L

Protein enhanced disease resistance 2-like

Defense response

Gh_D07G0246

CHIA

Acidic mammalian chitinase

Immune system process

Gh_D07G0248

CHIT1

Chitotriosidase-1

Immune response

Gh_D07G0249

CHIT1

Chitotriosidase-1

Immune response

Gh_D07G0251

ARR12

Two-component response regulator ARR12

Water deprivation

Gh_D07G0252

NKS1

Ubiquitin-associated protein (DUF1068)

Hyperosmotic salinity

Gh_D07G0256

TIL

Temperature-induced lipocalin-1

Hyperosmotic salinity, Cold, Freezing, Heat, Paraquat, Water deprivation

Gh_D07G0500

HVA22E

HVA22-like protein e

Hyperosmotic salinity, Cold, Water deprivation

Signaling or response to signal factors

Gh_A01G1564

MYB108

Transcription factor MYB108

Gibberellic acid, Jasmonic acid

Gh_A02G1099

WAK2

Wall-associated receptor kinase 2

Salicylic acid

Gh_A02G1100

WAK2

Wall-associated receptor kinase 2

Salicylic acid

Gh_A07G0624

DGK1

Diacylglycerol kinase 1

Intracellular signal transduction

Gh_A07G0729

RALFL27

Protein RALF-like 27

Calcium mediated signaling, Cell-cell signaling

Gh_D07G0251

ARR12

Two-component response regulator ARR12

Cytokinin

Gh_D07G0256

TIL

Temperature-induced lipocalin-1

Cytokinin

Gh_D07G0500

HVA22E

HVA22-like protein e

Abscisic acid

Gh_D10G0643

IAA27

Auxin-responsive protein IAA27

Auxin

Ion homeostasis or ion transport

Gh_A03G1732

AT2G16385

CIF1:Proteincasparlan strip integrity factor 1

Ion homeostasis

Gh_D07G0240

KAT3

Potassium channel KAT3

Potassium ion transmembrane transport, Regulation of ion transmembrane transport, Regulation of membrane potential

Gh_D07G0252

NKS1

Ubiquitin-associated protein (DUF1068)

Vacuolar sequestering of sodium ion

Gh_D07G0254

MOT1

Molybdate transporter 1

Molybdate ion transmembrane transporter activity, Molybdate ion transport

Gh_D07G0255

MOT1

Molybdate transporter 1

Molybdate ion transmembrane transporter activity, Molybdate ion transport

Gh_D07G0256

TIL

Temperature-induced lipocalin-1

Cellular chloride ion homeostasis, Cellular sodium ion homeostasis

Fatty acid

Gh_A01G1563

CUT1

3-ketoacyl-CoA synthase 6

Fatty acid biosynthetic process

Amino acid

Gh_D07G0242

PROC

Pyrroline-5-carboxylate reductase

Proline biosynthetic process, Pyrroline-5-carboxylate reductase activity

Gh_A03G1734

HISN7

Bifunctional phosphatase IMPL2, chloroplastic

Histidine biosynthetic process, Inositol biosynthetic process, Phosphatidylinositol phosphorylation

Gh_A03G1737

SAE2

SUMO-activating enzyme subunit 2

Acid-amino acid ligase activity

Gh_D08G0928

GDU2

Protein GLUTAMINE DUMPER 2

Amino acid transport

Gh_D08G0929

GDU3

Protein GLUTAMINE DUMPER 3

Amino acid transport