Table 1 DEGs involved in plant hormone signal transduction pathway
From: Integrative omics analysis on phytohormones involved in oil palm seed germination
Components | 0d-Vs-70d | 0d-Vs-75d | ||||
|---|---|---|---|---|---|---|
DEGs | ↑regulated | ↓regulated | DEGs | ↑regulated | ↓regulated | |
Auxin | 45 | 36 | 9 | 41 | 32 | 9 |
AUX1 | 5 | 5 | 0 | 4 | 4 | 0 |
TIR1 | 5 | 3 | 2 | 3 | 2 | 1 |
AUX/IAA | 14 | 12 | 2 | 14 | 11 | 3 |
ARF | 9 | 6 | 3 | 9 | 6 | 3 |
GH3 | 3 | 3 | 0 | 3 | 3 | 0 |
SAUR | 9 | 7 | 2 | 8 | 6 | 2 |
Cytokinin | 40 | 30 | 10 | 41 | 30 | 11 |
CRE1 | 19 | 12 | 7 | 18 | 11 | 7 |
B-ARR | 18 | 15 | 3 | 20 | 17 | 3 |
A-ARR | 3 | 3 | 0 | 3 | 2 | 1 |
Gibberellin | 27 | 23 | 4 | 27 | 23 | 4 |
GID1 | 11 | 10 | 1 | 12 | 11 | 1 |
GID2 | 2 | 2 | 0 | 2 | 2 | 0 |
DELLA | 14 | 11 | 3 | 13 | 10 | 3 |
Abscisic acid | 43 | 31 | 12 | 45 | 33 | 12 |
PYR/PYL | 8 | 8 | 0 | 8 | 8 | 0 |
PP2C | 30 | 21 | 9 | 31 | 22 | 9 |
SnRK2 | 1 | 0 | 1 | 2 | 1 | 1 |
ABF | 4 | 2 | 2 | 4 | 2 | 2 |
Ethylene | 28 | 15 | 13 | 30 | 15 | 15 |
ETR | 2 | 0 | 2 | 2 | 0 | 2 |
CTR1 | 13 | 7 | 6 | 12 | 5 | 7 |
MPK6 | 3 | 3 | 0 | 3 | 3 | 0 |
EIN2 | 4 | 0 | 4 | 4 | 0 | 4 |
EBF 1/2 | 0 | 0 | 0 | 1 | 0 | 1 |
ERF 1/2 | 6 | 5 | 1 | 8 | 7 | 1 |
Brassinosteroid | 42 | 33 | 9 | 37 | 30 | 7 |
BAK1 | 13 | 10 | 3 | 10 | 7 | 3 |
BRI1 | 9 | 7 | 2 | 8 | 7 | 1 |
BSK | 1 | 1 | 0 | 1 | 1 | 0 |
BSU1 | 1 | 0 | 1 | 0 | 0 | 0 |
BZR1/2 | 6 | 4 | 2 | 6 | 4 | 2 |
TCH4 | 7 | 6 | 1 | 8 | 7 | 1 |
CYCD3 | 5 | 5 | 0 | 4 | 4 | 0 |
Jasmonic acid | 30 | 26 | 4 | 32 | 29 | 3 |
JAR1 | 2 | 2 | 0 | 2 | 2 | 0 |
COI1 | 1 | 0 | 1 | 1 | 0 | 1 |
JAZ | 11 | 11 | 0 | 11 | 11 | 0 |
MYC2 | 16 | 13 | 3 | 18 | 16 | 2 |
Salicylic acid | 13 | 9 | 4 | 13 | 10 | 3 |
NPR1 | 2 | 2 | 0 | 1 | 1 | 0 |
TGA | 10 | 6 | 4 | 11 | 8 | 3 |
PR1 | 1 | 1 | 0 | 1 | 1 | 0 |
Total | 268 | 203 | 65 | 266 | 202 | 64 |