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Table 5 List of DEGs related to salt stress response identified in G2-S4 vs G2-CK comparison

From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress

Cluster ID Database description Identity score Identity E value log2 fold change
Salt sensory and signaling mechanisms
 14027.85357 Setaria italica CBL-interacting protein kinase 1 (CIPK1-SOS2-like)
(Nt ID: XM_004967556.3)
92.31% 8e-73 Infa
 14027.198243 Oryza sativa subsp. japonica CBL-interacting protein kinase 24 (SOS2)
(Swissprot ID: Q69Q47)
87.88% 8e-126 + 11.098
 14027.54233 Setaria italica probable cation transporter HKT9
(Nr ID: XP_004967240.1)
86.32% 1e-132 + 35.667
 14027.155893 Arabidopsis thaliana Sodium/hydrogen exchanger 1 (NHX1)
(Swissprot ID: Q68KI4)
68.46% 6e-177 + 14.324
Transcription factors
 14027.159287 Setaria italica trihelix transcription factor GTL1, (Nt ID: XM_012842882.1) 81.72% 6e-45 + 29.044
 14027.82197 Setaria italica bZIP ABSCISIC ACID-INSENSITIVE 5-like protein 7
(Swissprot ID: Q9M7Q2)
79.96% 9e-82 + 17.106
Hormone regulation of salt stress response
 14027.234361 Setaria italica abscisic acid 8′-hydroxylase 3
(Nr ID: XP_004957014.1)
83.43% 0.0 + 41.107
 14027.144393 Setaria italica abscisic acid receptor PYL8
(Nt ID: XM_004951229.2)
77.85% 4e-80 + 12.599
 14027.36786 Setaria italica brassinosteroid-6-oxidase 2 cytochrome P450 85A1
(KO ID: K12640)
93.36% 4e-141 + 19.415
 14027.99735 Oryza brachyantha 1-amino cyclopropane-1-carboxylate oxidase (ACC oxidase)
(Nt ID: XM_006647913.2)
72.38% 2e-149 + 22.325
 14027.89434 Oryza sativa Japonica Group ethylene receptor-like protein 1 (ETR1)
(Nr ID: AAL29304.2)
51.05% 3e-48 − 18.141
 14027.182197 Arabidopsis thaliana serine/threonine-protein kinase CTR1, (Swissprot ID: Q05609) 87.50% 3e-145 + 11.918
 14027.226694 Setaria italica ETHYLENE INSENSITIVE 3-like 3 protein (EIN3)
(Nr ID: XP_004973869.1)
61.43% 1e-113 + 14.849
 14027.190058 Zea mays Indole-3-acetaldehyde oxidase (AAO)
(Swissprot ID: O23887)
67.55% 4e-175 + 13.436
 14027.58358 Setaria italica probable indole-3-acetic acid-amido synthetase GH3.8
(Nr ID: XP_004958192.1)
69.87% 2e-133 Infa
 14027.189947 Oryza sativa subsp. japonica Jasmonic acid-amido synthetase JAR1
(Swissprot ID: Q6I581)
60.65% 2e-167 − 28.213
ROS scavenging regulatory mechanisms
 14027.42850 Flaveria pringlei NADP-dependent malic enzyme, chloroplastic
(Swissprot ID: P36444)
55.29% 6e-111 Infa
 14027.184286 Setaria italica ubiquinol oxidase 2, mitochondrial-like (AOX)
(Nr ID: XP_004976683.1)
93.02% 1e-64 + 20.525
 14027.154629 Setaria italica superoxide dismutase [Cu-Zn]
(Nt ID: XM_004958551.3)
89.43% 2e-74 + 36.275
 14027.237926 Setaria italica superoxide dismutase [Fe] 2, chloroplastic-like
(Nt ID: XM_004964461.2)
98.26% 2e-68 − 11.661
Osmolyte biosynthesis
 14027.146844 Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS)
(Nt ID: XM_004961829.3)
91.92% 6e-168 + 68.438
 14027.197137 Brachypodium distachyon delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (P5CSDH)
(Nr ID: XP_010231104.1)
92.46% 5e-138 + 17.285
 14027.163909 Oryza sativa subsp. indica Betaine aldehyde dehydrogenase (BADH)
(Swissprot ID: B3VMC0)
92.96% 1e-41 + 15.021
 5159.0 Zea mays ornithine decarboxylase-like (ODC)
(Nr ID: XP_008653000.1)
52.96% 1e-112 + 51.866
 14027.196396 Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC)
(Nr ID: XP_015643038.1)
92.73% 1e-142 + 65.072
 14027.211822 Setaria italica spermine synthase-like (SPMS)
(Nr ID: XP_004951294.1)
89.78% 2e-175 + 10.003
Photosynthesis and photorespiration
 14027.158740 Oryza sativa, subsp. japonica Group Ribulose bisphosphate carboxylase small chain A
(Swissprot ID: P18566)
88.96% 3e-100 − 24.091
 14027.70509 Arundo donax ribulose-bisphosphate carboxylase large subunit (rbcL)
(Nt ID: KJ880079.1)
100.00% 1e-104 − 17.789
 14027.158959 Setaria italica ruBisCO large subunit-binding protein subunit beta
(Nr ID: XP_004975721.1)
95.45% 2e-19 − 14.938
 14027.168331 Setaria italica ribulose bisphosphate carboxylase/oxygenase activase
(Nt ID: XM_004960085.2)
84.71% 1e-46 − 15.647
 14027.198015 Oryza brachyantha phosphoenolpyruvate carboxylase (PEPC) (Nr ID: XP_006644735) 93,85% 1e-174 + 11.496
 14027.153211 Oryza sativa chloroplastic pyruvate phosphate dikinase 1 (PPDK1)
(Swissprot ID: Q6AVA8)
88.41% 1e-163 + 29.711
 14027.158029 Setaria italica phosphoenolpyruvate carboxylase kinase (PEPC kinase)
(Nr ID: XP_004976235.1)
84.05% 2e-127 − 40.627
Biomass digestibility and biofuel production
 14027.150588 Setaria italica putative cinnamyl alcohol dehydrogenase
(Nt ID: XM_004972526.2)
79.53% 6e-116 + 14.463
  1. ait means that the read count value of CK samples is zero