Table 2 Summary of RNA-seq data and de novo assembly
From: Transcriptome analysis reveals candidate genes related to phosphorus starvation tolerance in sorghum
accession | Sample | Raw reads number | Clean reads number | Clean rate(%) | Q20(%) | Q30(%) | Mapped reads rate(%) | Uniquely mapped reads rate(%) | Gene Number | Transcript Number |
|---|---|---|---|---|---|---|---|---|---|---|
13443 | sufficient P_1 | 44920566 | 43070114 | 95.88 | 97.62 | 93.31 | 89.36 | 97.45 | 25489 | 33223 |
sufficient P_2 | 42063644 | 40616024 | 96.56 | 97.76 | 93.63 | 85.21 | 97.43 | 26110 | 33633 | |
sufficient P_3 | 30906152 | 29804314 | 96.43 | 97.73 | 93.55 | 88.59 | 97.54 | 24579 | 31528 | |
low P_2 | 37808338 | 36157312 | 95.63 | 97.6 | 93.28 | 88.36 | 97.62 | 24765 | 31741 | |
low P_3 | 48044802 | 46225956 | 96.21 | 97.71 | 93.54 | 87.75 | 97.66 | 25942 | 33394 | |
low P_5 | 51611204 | 49267030 | 95.46 | 97.54 | 93.16 | 89.32 | 97.41 | 25331 | 33283 | |
12484 | sufficient P_1 | 41036008 | 39463806 | 96.17 | 97.69 | 93.48 | 86.76 | 97.46 | 25018 | 32024 |
sufficient P_2 | 44683368 | 42943164 | 96.11 | 97.71 | 93.56 | 84.96 | 97.37 | 25196 | 32012 | |
sufficient P_3 | 43627358 | 41878828 | 95.99 | 97.67 | 93.46 | 84.02 | 97.46 | 25308 | 32157 | |
low P_1 | 41144016 | 39708924 | 96.51 | 97.76 | 93.63 | 88.35 | 97.55 | 24587 | 31120 | |
low P_2 | 46931232 | 45299694 | 96.52 | 97.75 | 93.61 | 86.93 | 97.52 | 24935 | 31395 | |
low P_5 | 39105304 | 37577298 | 96.09 | 97.65 | 93.39 | 87.27 | 97.61 | 24670 | 31545 |