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Table 3 Comparison of gene expressions related to Cd transmembrane transport between lcd1 and WT roots under Cd exposure using RNA-seq analysis

From: Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq

Gene ID

Gene locus

Gene names

lcd1 FPKM

WT FPKM

Fold change (lcd1/WT)

OsNRAMP family

 BGIOSGA025476

Os07g0258400

OsNRAMP1

6.20

19.44

0.33

 BGIOSGA011239

Os03g0208500

OsNRAMP2

19.56

24.24

0.83

 BGIOSGA020686

Os06g0676000

OsNRAMP3

40.09

62.85

0.66

 BGIOSGA007187

Os02g0131800

OsNRAMP4

217.56

147.96

1.51

 BGIOSGA024510

Os07g0257200

OsNRAMP5

47.21

43.86

1.11

 BGIOSGA001567

Os01g0503400

OsNRAMP6

12.06

14.16

0.88

 BGIOSGA035937

Os12g0581600

OsNRAMP7

9.67

12.98

0.77

OsZIP family

 BGIOSGA010092

Os03g0667500

OsIRT1

1.99

2.49

0.80

 BGIOSGA010094

Os03g0667300

OsIRT2

0.02

0.02

1.06

 BGIOSGA000021

Os01g0972200

OsZIP1

0.26

0.23

1.10

 BGIOSGA010542

Os03g0411800

OsZIP2

70.14

93.40

0.75

 BGIOSGA014364

Os04g0613000

OsZIP3

0.91

1.12

0.82

 BGIOSGA028188

Os08g0207401

OsZIP4

44.19

27.47

1.61

 BGIOSGA020032

Os05g0472700

OsZIP5

72.79

46.94

1.55

 BGIOSGA018749

Os05g0164800

OsZIP6

58.52

60.36

0.97

 BGIOSGA019328

Os05g0198400

OsZIP7

91.10

72.76

1.25

 BGIOSGA025423

Os07g0232800

OsZIP8

18.26

12.97

1.41

 BGIOSGA020030

Os05g0472400

OsZIP9

41.71

14.70

2.84

 BGIOSGA023103

Os06g0566201

OsZIP10

22.26

9.91

2.25

 BGIOSGA018313

Os05g0316100

OsZIP11

39.91

34.43

1.16

OsHMA family

 BGIOSGA020639

Os06g0690700

OsHMA1

12.91

11.42

1.13

 BGIOSGA020589

Os06g0700700

OsHMA2

101.99

95.74

1.07

 BGIOSGA024568

Os07g0232900

OsHMA3

12.45

9.80

1.27

 BGIOSGA007732

Os02g0196600

OsHMA4

105.93

82.41

1.29

 BGIOSGA016903

Os04g0556000

OsHMA5

42.69

37.76

1.13

 BGIOSGA007052

Os02g0172600

OsHMA6

19.51

21.01

0.93

 BGIOSGA028879

Os08g0486100

OsHMA7

20.66

17.04

1.21

 BGIOSGA011343

Os03g0178100

OsHMA8

12.85

11.85

1.08

 BGIOSGA020720

Os06g0665800

OsHMA9

74.27

68.57

1.08

OsABC transporter family

 BGIOSGA001233

Os01g0609300

OsABCG36/OsPDR9

0.34

2.70

0.13

 BGIOSGA004262

Os01g0696600

OsABCB4

11.83

26.58

0.45

 BGIOSGA028618

Os08g0398300

OsABCA7

3.15

7.53

0.42

 BGIOSGA015573

Os04g0209200

OsABCC14

2.12

6.01

0.35

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BMC Plant Biology

ISSN: 1471-2229

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