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Table 3 Comparison of gene expressions related to Cd transmembrane transport between lcd1 and WT roots under Cd exposure using RNA-seq analysis

From: Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq

Gene ID Gene locus Gene names lcd1 FPKM WT FPKM Fold change (lcd1/WT)
OsNRAMP family
 BGIOSGA025476 Os07g0258400 OsNRAMP1 6.20 19.44 0.33
 BGIOSGA011239 Os03g0208500 OsNRAMP2 19.56 24.24 0.83
 BGIOSGA020686 Os06g0676000 OsNRAMP3 40.09 62.85 0.66
 BGIOSGA007187 Os02g0131800 OsNRAMP4 217.56 147.96 1.51
 BGIOSGA024510 Os07g0257200 OsNRAMP5 47.21 43.86 1.11
 BGIOSGA001567 Os01g0503400 OsNRAMP6 12.06 14.16 0.88
 BGIOSGA035937 Os12g0581600 OsNRAMP7 9.67 12.98 0.77
OsZIP family
 BGIOSGA010092 Os03g0667500 OsIRT1 1.99 2.49 0.80
 BGIOSGA010094 Os03g0667300 OsIRT2 0.02 0.02 1.06
 BGIOSGA000021 Os01g0972200 OsZIP1 0.26 0.23 1.10
 BGIOSGA010542 Os03g0411800 OsZIP2 70.14 93.40 0.75
 BGIOSGA014364 Os04g0613000 OsZIP3 0.91 1.12 0.82
 BGIOSGA028188 Os08g0207401 OsZIP4 44.19 27.47 1.61
 BGIOSGA020032 Os05g0472700 OsZIP5 72.79 46.94 1.55
 BGIOSGA018749 Os05g0164800 OsZIP6 58.52 60.36 0.97
 BGIOSGA019328 Os05g0198400 OsZIP7 91.10 72.76 1.25
 BGIOSGA025423 Os07g0232800 OsZIP8 18.26 12.97 1.41
 BGIOSGA020030 Os05g0472400 OsZIP9 41.71 14.70 2.84
 BGIOSGA023103 Os06g0566201 OsZIP10 22.26 9.91 2.25
 BGIOSGA018313 Os05g0316100 OsZIP11 39.91 34.43 1.16
OsHMA family
 BGIOSGA020639 Os06g0690700 OsHMA1 12.91 11.42 1.13
 BGIOSGA020589 Os06g0700700 OsHMA2 101.99 95.74 1.07
 BGIOSGA024568 Os07g0232900 OsHMA3 12.45 9.80 1.27
 BGIOSGA007732 Os02g0196600 OsHMA4 105.93 82.41 1.29
 BGIOSGA016903 Os04g0556000 OsHMA5 42.69 37.76 1.13
 BGIOSGA007052 Os02g0172600 OsHMA6 19.51 21.01 0.93
 BGIOSGA028879 Os08g0486100 OsHMA7 20.66 17.04 1.21
 BGIOSGA011343 Os03g0178100 OsHMA8 12.85 11.85 1.08
 BGIOSGA020720 Os06g0665800 OsHMA9 74.27 68.57 1.08
OsABC transporter family
 BGIOSGA001233 Os01g0609300 OsABCG36/OsPDR9 0.34 2.70 0.13
 BGIOSGA004262 Os01g0696600 OsABCB4 11.83 26.58 0.45
 BGIOSGA028618 Os08g0398300 OsABCA7 3.15 7.53 0.42
 BGIOSGA015573 Os04g0209200 OsABCC14 2.12 6.01 0.35