Skip to main content

Table 2 Summary of SNPs showing ΔSNP-index from 0.6 to 1 within the candidate region

From: Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq

ΔSNP-index Position Ref Alt Mutated gene Mutation Type Gene Annotation
0.95 8,887,787 C T BGIOSGA024510 Missense (P to L) metal transporter Nramp5
0.92 9,174,237 C T BGIOSGA024502 Intron mutation GHD7 protein
0.57 2,570,339 G A BGIOSGA024818 5′-UTR mutation Hypothetical protein
0.57 18,066,507 C A BGIOSGA025813 3′-UTR mutation Hypothetical protein
0.57 19,252,302 T A BGIOSGA025883 Missense (R to W) Hypothetical protein
0.97 7,743,062 G A None / /
0.84 6,051,970 T A None / /
0.76 16,841,982 G T None / /
0.6 4,343,274 G A None / /
  1. identified by MutMap analysis
  2. Ref: reference base in WT, Alt: altered base in the lcd1 mutant