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Table 3 Detailed results of GO subcategory and KEGG pathways analyses for DEGs identified via RNA-seq analysis

From: A transcriptome analysis reveals a role for the indole GLS-linked auxin biosynthesis in secondary dormancy in rapeseed (Brassica napus L.)

Top 10 of detailed GO subcategory analysis Top 10 of KEGG pathways
Downregulated DEGs Upregulated DEGs Downregulated DEGs Upregulated DEGs
Protein storage vacuole Sulfur compound metabolism Sulfur relay system Sulfur metabolism
Plastid thylakoid membrane Glycosyl compound metabolism Fatty acid degradation Carbon metabolism
Oxidoreductase activity Oxoacid metabolism Peroxisome Biosynthesis of amino acids
Intracellular protein transmembrane import Organic acid metabolism Cutin, suberine and wax biosynthesis Citrate cycle (TCA cycle)
Thylakoid membrane Carbohydrate derivative metabolism Carotenoid biosynthesis 2-Oxocarboxylic acid metabolism
Photosynthetic membrane Secondary metabolic process Tyrosine metabolism Cysteine and methionine metabolism
Cytoplasm Response to cadmium ion alpha-Linolenic acid metabolism Glucosinolate biosynthesis
Seed maturation S-glycoside metabolic process Ascorbate and aldarate metabolism Tryptophan metabolism
Fruit development Glucosinolate metabolism Mismatch repair Glycine, serine and threonine metabolism
Intramolecular lyase activity Response to metal ion Fructose and mannose metabolism Pyruvate metabolism
  1. The enriched pathways in bold are linked with auxin biosynthesis