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Table 4 Genomic classification, geographic information and genetic diversity analysis of 95 accessions among three Elymus genomes

From: EST-SSR marker development based on RNA-sequencing of E. sibiricus and its application for phylogenetic relationships analysis of seventeen Elymus species

Gen Species Accession SS Geographic information Genetic analysis
Origins La(N) Lo(E) Al(m) Na Ne H I %P
StH Elymus sibiricus PI504462 5 Xining, Qinghai, China (Geo-1) 36.7° 101.8° 2300 1.605 1.358 0.211 0.317 60.5
PI531669 6 Xining, Qinghai, China (Geo-1) 36.6° 101.8° 2400 1.603 1.351 0.208 0.313 60.3
PI499456 6 Shandan, Gansu, China (Geo-1) 38.8° 101.1° 1750 1.652 1.368 0.221 0.334 65.2
PI639859 2 Aba, Sichuan, China (Geo-1) 33.1° 102.6° 3320 1.268 1.189 0.111 0.162 26.8
PI655199 6 Longriba, Sichuan, China (Geo-1) 32.1° 102.6° 3280 1.610 1.322 0.196 0.300 61.0
PI499453 6 Inner Mongolia, China (Geo-2) 43.9° 116.1° 1000 1.580 1.309 0.188 0.287 58.0
PI665507 6 Ulaanbaatar, Mongolia (Geo-2) 48.1° 108.7° 1524 1.600 1.321 0.195 0.297 60.0
PI634231 3 Mongolia (Geo-2) 47.6° 112.4° 747 1.470 1.306 0.179 0.265 47.0
PI610886 6 Dzuunburen, Mongolia (Geo-2) 50.0° 105.7° 920 1.659 1.384 0.226 0.341 65.9
W621576 2 Hatgal, Mongolia (Geo-2) 50.3° 99.8° 2042 1.309 1.219 0.128 0.187 30.9
PI598782 6 Buryat, Russia (Geo-3) 52.2° 109.3° 900 1.596 1.318 0.193 0.295 59.6
PI598789 6 Chita, Russia (Geo-3) 52.1° 113.5° 700 1.635 1.364 0.216 0.327 63.5
PI610991 3 Buryat, Russia (Geo-3) 51.9° 104.8° 630 1.400 1.259 0.151 0.225 40.0
PI655095 6 Bayshint, Mongolia (Geo-4) 49.7° 90.3° 1509 1.685 1.398 0.235 0.354 68.5
PI611014 6 Gorno Altay, Russia (Geo-4) 50.3° 87.7° 950 1.607 1.325 0.196 0.299 60.7
PI634228 6 Gorno Altay, Russia (Geo-4) 51.2° 85.6° 1250 1.573 1.314 0.188 0.287 57.3
PI655084 6 Gorno Altay, Russia (Geo-4) 51.3° 85.6° 1090 1.619 1.341 0.204 0.310 61.9
PI639757 6 Gorno Altay, Russia (Geo-4) 51.7° 85.8° 340 1.591 1.306 0.187 0.287 59.1
PI655140 6 Urumqi, Xinjiang, China (Geo-5) 43.5° 87.0° 1650 1.640 1.383 0.225 0.337 64.0
PI595182 6 Urumqi, Xinjiang, China (Geo-5) 43.9° 87.9° 1250 1.677 1.392 0.233 0.351 67.7
PI595180 4 Urumqi, Xinjiang, China (Geo-5) 43.8° 87.9° 1600 1.509 1.313 0.184 0.275 50.9
PI619577 5 Urumqi, Xinjiang, China (Geo-5) 43.1° 87.6° 2360 1.575 1.351 0.205 0.307 57.5
PI499468 6 Urumqi, Xinjiang, China (Geo-5) 43.7° 87.9° 1770 1.626 1.373 0.220 0.331 62.6
PI499462 2 Urumqi, Xinjiang, China (Geo-5) 43.6° 87.9° 1050 1.268 1.189 0.111 0.162 26.8
PI598780 6 Vladivostok, Russia (Geo-6) 43.2° 132.0° 200 1.552 1.288 0.176 0.270 55.2
PI628699 5 Sovetskaya Gavan, Russia (Geo-6) 49.0° 140.3° 50 1.631 1.338 0.205 0.314 63.1
PI628706 6 Sovetskaya Gavan, Russia (Geo-6) 48.6° 139.9° 40 1.650 1.385 0.227 0.342 65.0
PI598778 6 Kazakhstan (Geo-7) 1.692 1.393 0.233 0.353 69.2
PI659930 5 Kochkorka, Kyrgyzstan (Geo-7) 41.7° 75.7° 2438 1.622 1.376 0.222 0.332 62.2
PI659942 6 Kochkorka, Kyrgyzstan (Geo-7) 41.7° 75.5° 2627 1.687 1.401 0.236 0.356 68.7
  5.2      1.573 1.331 0.197 0.297 57.3
StHY Elymus cylindricus WEcy3 9 Yongdeng, Gansu, China 36.7° 103.3° 2300 1.734 1.398 0.239 0.363 73.4
StHY Elymus dahuricus WEda5 8 Shandan, Gansu, China 38.8° 101.1° 1750 1.694 1.374 0.225 0.344 69.4
StHY Elymus excelsus WEex1 6 Yongdeng, Gansu, China 36.7° 103.3° 2300 1.654 1.364 0.218 0.331 65.4
StHY Elymus nutans PI499612 6 Xining, Qinghai, China (Geo-8) 36.7° 101.3° 2450 1.652 1.391 0.229 0.344 65.2
PI619586 6 Dulan, Qinghai, China (Geo-8) 35.8° 97.6° 2950 1.659 1.363 0.218 0.331 65.9
PI531645 6 Qinghai, China (Geo-8) 1.720 1.438 0.255 0.382 72.0
Xiahe15 4 Xiahe, Gansu, China (Geo-8) 35.0° 102° 3100 1.532 1.304 0.184 0.278 53.2
PI639852 5 Xiahe, Gansu, China (Geo-8) 35.1° 102.4° 2960 1.608 1.358 0.212 0.320 60.8
Xiahe48 5 Xiahe, Gansu, China (Geo-8) 34.6° 102.1° 3100 1.650 1.371 0.221 0.335 65.0
PI655186 5 Xiahe, Gansu, China (Geo-8) 35.2° 102.5° 2830 1.617 1.368 0.217 0.326 61.7
PI655193 4 Maqu, Gansu, China (Geo-8) 34.0° 102.1° 3280 1.561 1.339 0.200 0.300 56.1
PI655195 5 Maqu, Gansu, China (Geo-8) 34.0° 102.8° 3350 1.587 1.336 0.201 0.304 58.7
PI655192 5 Maqu, Gansu, China (Geo-8) 34.1° 102.2° 3660 1.656 1.403 0.236 0.353 65.6
Luqu28 5 Luqu, Gansu, China (Geo-8) 34.5° 102.7° 3100 1.593 1.338 0.201 0.304 59.3
PI639855 5 Luqu, Gansu, China (Geo-8) 34.7° 102.5° 3060 1.657 1.406 0.238 0.355 65.7
Luqu27 5 Luqu, Gansu, China (Geo-8) 34.4° 102.5° 3100 1.698 1.406 0.241 0.363 69.8
PI628698 6 Tianzhu, Gansu, China (Geo-8) 37.2° 102.8° 2860 1.694 1.398 0.237 0.357 69.4
PI499451 6 Lanzhou, Gansu, China (Geo-8) 36.1° 103.8° 1520 1.691 1.404 0.238 0.359 69.1
PI499611 4 Lanzhou, Gansu, China (Geo-8) 37.3° 102.8° 2300 1.586 1.363 0.213 0.319 58.6
PI639858 6 Aba, Sichuan, China (Geo-9) 33.1° 102.7° 3460 1.649 1.367 0.218 0.329 64.9
PI619521 6 Luhuo, Sichuan, China (Geo-9) 31.8° 100.5° 3740 1.647 1.375 0.222 0.335 64.7
W622112 4 Luhuo, Sichuan, China (Geo-9) 31.5° 100.5° 3190 1.589 1.375 0.218 0.324 58.9
PI619569 6 Dege, Sichuan, China (Geo-9) 31.9° 99.0° 4110 1.661 1.368 0.221 0.336 66.1
PI619520 6 Barkam, Sichuan, China (Geo-9) 32.0° 102.7° 3300 1.642 1.353 0.213 0.323 64.2
W622107 6 Kangding, Sichuan, China (Geo-9) 30.0° 101.8° 3800 1.673 1.392 0.232 0.350 67.3
PI639862 4 Kangding, Sichuan, China (Geo-9) 30.0° 101.9° 3110 1.516 1.300 0.180 0.272 51.6
W623602 5 Litang, Sichuan, China (Geo-9) 29.9° 100.3° 3780 1.603 1.361 0.212 0.318 60.3
PI619516 3 Sichuan, China (Geo-9) 1.406 1.264 0.154 0.228 40.6
PI619527 6 Lhasa, Tibet, China (Geo-10) 29.7° 91.1° 4460 1.694 1.401 0.238 0.359 69.4
PI619530 6 Lhasa, Tibet, China (Geo-10) 30.0° 90.6° 4020 1.645 1.355 0.212 0.323 64.5
PI619526 6 Gongbogyamda, Tibet, China (Geo-10) 30.0° 93.1° 3600 1.673 1.380 0.228 0.345 67.3
PI619589 6 Nedong, Tibet, China (Geo-10) 29.3° 91.8° 3800 1.656 1.365 0.219 0.332 65.6
PI619533 6 Nedong, Tibet, China (Geo-10) 29.2° 91.8° 3470 1.638 1.347 0.209 0.319 63.8
PI619590 6 Changdu, Tibet, China (Geo-10) 30.7° 97.3° 3740 1.642 1.363 0.218 0.329 64.2
PI619592 4 Changdu, Tibet, China (Geo-10) 31.1° 97.2° 4200 1.511 1.312 0.183 0.275 51.1
PI619525 6 Tibet, China (Geo-10) 31.3° 98.0° 3100 1.647 1.365 0.217 0.329 64.7
PI619522 4 Gongjue, Tibet, China (Geo-10) 30.9° 98.3° 4100 1.551 1.347 0.202 0.301 55.1
PI619532 5 Yangbajain, Tibet, China (Geo-10) 30.1° 90.5° 4150 1.607 1.359 0.212 0.319 60.7
W623617 5 Tibet, China (Geo-10) 30.2° 99.9° 4000 1.624 1.352 0.210 0.319 62.4
PI547394 6 Inner Mongolia, China (Geo-11) 1.645 1.349 0.211 0.322 64.5
PI499450 5 Inner Mongolia, China (Geo-11) 1.668 1.407 0.237 0.355 66.8
PI628675 6 Hotan, Xinjiang, China (Geo-12) 36.3° 80.0° 3300 1.691 1.398 0.236 0.356 69.1
PI619519 6 Burqin, Xinjiang, China (Geo-12) 47.7° 86.9° 450 1.715 1.392 0.236 0.359 71.5
PI619575 5 Habahe, Xinjiang, China (Geo-12) 47.9° 86.2° 1200 1.663 1.392 0.232 0.348 66.3
PI564956 6 Pakistan (Geo-13) 1.684 1.389 0.232 0.350 68.4
W610220 6 Gilgit, Pakistan (Geo-13) 35.0° 74.0° 2736 1.666 1.384 0.228 0.344 66.6
PI406466 6 Russia (Geo-14) 1.671 1.383 0.228 0.344 67.1
StHY Elymus tangutorum WEta2 5 Minle, Gansu, China 38.4° 100.8° 2310 1.654 1.394 0.231 0.347 65.4
  5.5      1.637 1.369 0.219 0.330 63.7
StY Elymus abolinii PI499585 5 Urumqi, Xinjiang, China 43.8° 88.1° 1900 1.617 1.378 0.220 0.329 61.7
StY Elymus antiquus PI564957 2 Nedong, Tibet, China 29.2° 91.8° 3550 1.309 1.219 0.128 0.187 30.9
StY Elymus burchan-buddae PI636649 4 Xiahe, Gansu, China 35.2° 102.5° 3000 1.600 1.363 0.214 0.322 60.0
PI655143 7 Barkam, Sichuan, China 32.0° 102.6° 3300 1.720 1.401 0.239 0.363 72.0
PI655210 1 Litang, Sichuan, China 30.2° 99.9° 4000
StY Elymus ciliaris PI531575 7 Beijing, China 39.9° 116.3° 60 1.685 1.387 0.230 0.348 68.5
StY Elymus gmelinii PI639761 3 Gorno Altay, Russia 50.6° 86.5° 950 1.460 1.299 0.174 0.259 46.0
PI655100 5 Zhaosu, Xinjiang, China 43.2° 81.2° 2370 1.551 1.320 0.189 0.286 55.1
W621543 2 Erdenebulgan, Miongolia 50.2° 101.1° 1676 1.280 1.198 0.116 0.169 28.0
StY Elymus longearistatus PI401282 1 Tehran, Iran 36.1° 51.4° 2850
StY Elymus macrochaetus PI564944 4 Alma Ata, Kazakhstan 43.1° 76.9° 2000 1.509 1.321 0.186 0.278 50.9
StY Elymus nevskii PI564925 1 Novosibirsk, Russia 54.8° 83.1° 150
PI632570 4 Bayan-Olgii, Mongolia 49.0° 89.8° 1848 1.488 1.299 0.175 0.262 48.8
StY Elymus panormitanus PI254866 2 Sirsank, Mosul, Iraq 37.6° 44.7° 200 1.315 1.223 0.130 0.190 31.5
StY Elymus semicostatus PI564964 3 Pakistan 1.420 1.260 0.155 0.232 42.0
StY Elymus tibeticus PI639828 3 Lhasa, Tibet, China 29.3° 91.0° 3500 1.414 1.260 0.154 0.230 41.4
WEti4 8 Tianzhu, Gansu, China 37.0° 103.1° 2400 1.696 1.406 0.239 0.360 69.6
  3.6      1.504 1.309 0.182 0.272 50.4
  1. Gen, Genome; SS, sample size; La, Latitude; Lo, Longitude; Al, Altitude; Na, observed number of alleles; Ne, effective number of alleles; H, Nei’s genetic diversity; I, Shannon’s Information index; %P, the percentage of polymorphic loci; Geo-1 to Geo-7, different populations of Elymus sibiricus with different geographic origins; Geo-8 to Geo-14, different populations of Elymus nutans with different geographic origins