Table 3 List of selected differentially expressed circRNAs under salt stress in the root
From: Identification of cucumber circular RNAs responsive to salt stress
circRNA | log2FC | FDR | parent gene | annotation |
|---|---|---|---|---|
protein serine/threonine kinase activity (GO:0004674) | ||||
 Chr1:21522408|21523334 | 3.64 | 0.007 | Csa1G574260 | serine/threonine-protein kinase CTR1-like |
 Chr3:29130864|29133923 | 5.256 | 0.01 | Csa3G749850 | serine/threonine-protein kinase CTR1-like |
 Chr3:20613886|20615220 | −5.32 | 0.003 | Csa3G444590 | proline-rich receptor-like protein kinase PERK8-like |
 Chr6:5205917|5207198 | 4.82 | 0.010 | Csa6G077450 | SNF1-related protein kinase catalytic subunit alpha KIN10-like |
 Chr6:10126493|10128076 | −5.71 | 0.002 | Csa6G146930 | receptor-like serine/threonine-protein kinase NCRK-like |
xylan metabolic process (GO:0045491) | ||||
 Chr2:2178032|2180266 | 6.64 | 0.002 | Csa2G012150 | 5’-3’ exoribonuclease 4-like |
 Chr3:6464544|6464882 | 3.94 | 0.021 | Csa3G118000 | E3 ubiquitin-protein ligase BRE1-like |
 Chr5:22801672|22802005 | −4.43 | 0.008 | Csa5G606350 | galactoside 2-alpha-L-fucosyltransferase-like |
cell division (GO:0051301) | ||||
 Chr7:16395598|16399679 | −6.01 | 0.001 | Csa7G427110 | actin-related protein 7-like |
 Chr4:20046421|20047663 | −4.99 | 0.004 | Csa4G622880 | α, α-trehalose-phosphate synthase [UDP-forming] 1-like |
 Chr4:18459900|18468401 | 6.34 | 0.003 | Csa4G561190 | cyclin-dependent kinase E-1-like |
 Chr4:15928017|15929087 | 5.59 | 0.005 | Csa4G425740 | G2/mitotic-specific cyclin S13–6-like |
 Chr4:21955412|21956601 | −6.01 | 0.001 | Csa4G646110 | ATP-dependent zinc metalloprotease FTSH 4 |
Ras GTPase activator activity (GO:0005099) | ||||
 Chr2:21079250|21079598 | −4.68 | 0.006 | Csa2G406820 | TBC1 domain family member 2A-like |
 Chr2:8079362|8082138 | −6.23 | 0.001 | Csa2G120950 | TBC1 domain family member 13-like |
 Chr3:4284168|4285558 | 5.26 | 0.007 | Csa3G078290 | GTPase-activating protein gyp7-like |
 Chr4:1337637|1340074 | 4.29 | 0.016 | Csa4G008220 | ADP-ribosylation factor GTPase-activating protein AGD3-like |
 Chr6:26240476|26241992 | 5.14 | 0.008 | Csa6G510340 | Ras-related protein RABB1c-like |
Ion homeostasis | ||||
 Chr2:16186442|16191680 | 6.44 | 0.003 | Csa2G351730 | K+ efflux antiporter 6-like |
 Chr3:25629954|25631297 | 5.14 | 0.008 | Csa3G651710 | vacuolar cation/proton exchanger 2-like |
 Chr3:7346435|7347924 | 5.20 | 0.008 | Csa3G122590 | K+ efflux antiporter 2, chloroplastic-like |
 Chr5:2818033|2823737 | −7.03 | 0.000 | Csa5G098980 | sodium/hydrogen exchanger 7-like |