Table 2 Mapping results of clean reads against the peanut genomic sequence
sample | Total clean reads | Total mapped reads | Uniquely mapped reads | Multiple mapped reads | Spliced reads | Unspliced reads | Properly mapped reads |
|---|---|---|---|---|---|---|---|
Fe50_1 | 55,425,442 | 43,980,460 (79.35%) | 42,937,535 (77.47%) | 1,042,925 (1.88%) | 16,275,516 (29.36%) | 26,662,019 (48.1%) | 38,544,100 (69.54%) |
Fe50_2 | 59,237,208 | 46,911,319 (79.19%) | 45,798,117 (77.31%) | 1,113,202 (1.88%) | 17,286,768 (29.18%) | 28,511,349 (48.13%) | 41,375,852 (69.85%) |
Fe0_1 | 55,464,812 | 45,419,922 (81.89%) | 44,410,704 (80.07%) | 1,009,218 (1.82%) | 16,915,252 (30.5%) | 27,495,452 (49.57%) | 40,481,232 (72.99%) |
Fe0_2 | 50,783,746 | 40,804,086 (80.35%) | 39,847,134 (78.46%) | 956,952 (1.88%) | 14,885,388 (29.31%) | 24,961,746 (49.15%) | 36,103,056 (71.09%) |
Fe0Cd_1 | 55,239,888 | 44,105,861 (79.84%) | 42,995,894 (77.83%) | 1,109,967 (2.01%) | 16,183,762 (29.3%) | 26,812,132 (48.54%) | 38,747,872 (70.14%) |
Fe0Cd_2 | 52,878,422 | 42,298,150 (79.99%) | 41,248,604 (78.01%) | 1,049,546 (1.98%) | 15,493,356 (29.3%) | 25,755,248 (48.71%) | 37,208,590 (70.37%) |
Fe50Cd_1 | 64,455,150 | 51,650,748 (80.13%) | 50,399,248 (78.19%) | 1,251,500 (1.94%) | 18,847,959 (29.24%) | 31,551,289 (48.95%) | 45,817,274 (71.08%) |
Fe50Cd_2 | 48,724,284 | 38,614,623 (79.25%) | 37,716,105 (77.41%) | 898,518 (1.84%) | 13,970,730 (28.67%) | 23,745,375 (48.73%) | 34,228,200 (70.25%) |