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Table 2 Comparison between C. songorica water stress response genes and rice drought response network

From: Differential co-expression networks of long non-coding RNAs and mRNAs in Cleistogenes songorica under water stress and during recovery

Rice module Rice genes Puativa orthologs in C. songorica Puativa orthologs in C. songorica target genes of DE_lncRNA Puativa orthologs in C. songorica shoot DEGs Puativa orthologs in C. songorica root DEGs Puativa module function
Module 1 303 849 105 32/262 44/341  
Module 2 213 513 51 33/213 22/174  
Module 3 141 459 57 34/235 35/242  
Module 4 134 237 29 18/111 17/114  
Module 5 117 341 42 19/163 15/134  
Module 6 90 431 40 12/130 14/146  
Module 7 77 155 18 8/62 14/38  
Module 8 48 155 30 12/56 13/49  
Module 9 47 144 18 3/48 2/37  
Module 10 47 247 9 6/74 10/64 post-translational protein
Module 11 46 112 30 5/38 3/32  
Module 12 42 235 10 18/112 16/122 protein phosphorylation
Module 13 38 136 9 10/59 13/70 fatty acid metabolic process
Module 14 28 66 10 5/30 5/30  
Module 15 21 48 6 1/12 2/15 response to stimulus
  1. There are 1392 rice genes in 15 modules. Base on OrthoMCL method, a total of 1605 and 1608 differentially expressed genes were identified as putative orthologues of rice genes in shoot and root of C. songorica, respectively. In putative orthologues in C. songorica shoot DEGs and root DEGs, the numbers on the left represent the DE_lncRNAs target genes in putative orthologs