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Fig. 1 | BMC Plant Biology

Fig. 1

From: Differential co-expression networks of long non-coding RNAs and mRNAs in Cleistogenes songorica under water stress and during recovery

Fig. 1

An integrative computational pipeline for the systematic identification and characteristics of lncRNAs in C. songorica. a Informatics pipeline for the identification of lncRNAs in C. songorica. b Venn chart showing the numbers of candidate lncRNAs filtered by the Pfam, CPC, CPAT and CNCI assemblies or by both assemblies. Pfam: Pfam Scan, CPC: Coding Potential Calculator, CPAT: Coding Potential Assessment Tool, CNCI: Coding-Non-Coding Index. c Composition of different types of lncRNAs. d Number distributions of spliced C. songorica lncRNAs and mRNAs. e The number of exons per transcription for mRNAs and lncRNAs. f Transcript size distributions for all mRNAs and lncRNAs. g Open reading frame (ORF) distributions for all mRNAs and lncRNAs

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