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Table 1 Summary of sequencing strategies and sequences obtained

From: Comparative transcriptomics identifies patterns of selection in roses

Species Sample Repetition Reads number Reads bases (nt) Q20 (%) Accession code
Rosa wichuriana ‘Basye’s Thornless’ (BT) SAMa Total 156,722,692 14,104,983,240 95.8 _
Rep1 51,669,692 4,650,272,280   SAMN07808870
Rep2 53,341,618 4,800,745,620   SAMN07808871
Rep3 51,710,726 4,653,965,340   SAMN07808872
leaf_novb Total 131,025,452 18,923,248,232 95.8 _
Rep1 42,294,066 6,100,424,928   SAMN07808867
Rep2 42,725,012 6,170,189,794   SAMN07808868
Rep3 46,006,374 6,652,633,510   SAMN07808869
leaf_marb Total 134,110,978 19,389,814,312 96.1 _
Rep1 44,236,512 6,418,203,960   SAMN07808864
Rep2 46,651,880 6,762,697,476   SAMN07808865
Rep3 43,222,586 6,208,912,876   SAMN07808866
Rosa chinensis ‘Old Blush’ (OB) SAMa Total 159,834,774 14,385,129,660 95.3 _
Rep1 52,443,532 4,643,438,236   SAMN07808861
Rep2 53,284,740 4,800,745,624   SAMN07808862
Rep3 54,106,502 4,940,945,800   SAMN07808863
leaf_novb Total 137,399,212 19,719,505,590 95.8 _
Rep1 44,950,340 6,501,086,190   SAMN07808858
Rep2 45,260,556 6,426,857,278   SAMN07808859
Rep3 47,188,316 6,791,562,122   SAMN07808860
leaf_marb Total 130,341,518 18,669,073,728 96.7 _
Rep1 42,299,982 6,021,996,256   SAMN07808855
Rep2 43,001,278 6,170,274,204   SAMN07808856
Rep3 45,040,258 6,476,803,268   SAMN07808857
all other datac   550,108,308 63,356,156,640 95.6 _
  1. Data are sum of three biological replications. aand b, samples sequenced via Illumina pair-end methods (PE100bp for a and PE150bp for b);c, data from references (see Table 2)