Table 1 DNA methylation-related genes in peanut
From: Global Methylome and gene expression analysis during early Peanut pod development
| Â | Orthologous from | Orthologous from | Orthologs in |
|---|---|---|---|
Gene name | A genome | B genome | Arabidopsis |
NUCLEAR RNA POLYMERASE D1(NRPD1) | Aradu.EXQ60 | Araip.NHV7F | AT1G63020 |
NRPE1 | Aradu.U7301 | Araip.A5H9W | AT2G40030 |
NRPD2/NRPE2 | Aradu.8Q4X6 | Araip.AVR8T | AT3G23780 |
NRPD4/NRPE4 | Aradu.WLM92 | Araip.F0FD4 | AT4G15950 |
NRPE5 | Aradu.LT7X3 | Araip.2H1ED | AT3G57080 |
NRPE9B | Aradu.8VP1A | Araip.4786 J | AT4G16265 |
NRPB1 | Aradu.FV8TW | Araip.AAM5W | AT4G35800 |
RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) | Aradu.0K8SM | Araip.63JS7 | AT4G11130 |
DICER-LIKE 3 (DCL3) | Aradu.EH11Z | Araip.0XV9H | AT3G43920 |
HUA ENHANCER 1 (HEN1) | Aradu.I4VB1 | Araip.0P57Y | AT4G20910 |
ARGONAUTE 4 (AGO4) | Aradu.2V8U8 | Araip.DM5GK | AT2G27040 |
AGO6 | Aradu.E98LA | Araip.70L1G | AT2G32940 |
AGO9 | Aradu.2V8U8 | Araip.DM5GK | AT5G21150 |
CLASSY 1 (CLSY1) | Aradu.TP9JP | Araip.VW316 | AT3G42670 |
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 (DRD1) | Aradu.E58SH | Araip.VVZ0N | AT2G16390 |
DEFECTIVE IN MERISTEM SILENCING 3 (DMS3) | Aradu.NCP7U | Araip.X02G0 | AT3G49250 |
RNA-DIRECTED DNA METHYLATION 1 (RDM1) | Aradu.0VT9B | Araip.6D36H | AT3G22680 |
KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 (KTF1) | Aradu.4094 W | Araip.J0JMG | AT5G04290 |
INVOLVED IN DE NOVO 2 (IDN2) | Aradu.RZ908 | Araip.15C6I | AT3G48670 |
IDN2 PARALOGUE 1 (IDP1) | Aradu.N0F41 | Araip.47FQ5 | AT1G15910 |
IDP2 | Aradu.N0F41 | Araip.47FQ5 | AT4G00380 |
DMS4 | Aradu.EW5NL | Araip.C9F8X | AT2G30280 |
DOMAINS REARRANGED METHYLTRANSFERASE 2 (DRM2) | Aradu.NFN5F | Araip.B5M84 | AT5G14620 |
SUVH2 | Aradu.A6HVN | Araip.M3BFQ | AT2G33290 |
SUVH9 | Aradu.A6HVN | Araip.M3BFQ | AT4G13460 |
SUVR2 | Aradu.VA4GN | Araip.1D0HT | AT5G43990 |
MICRORCHIDIA 1 (MORC1) | Aradu.FTZ2T | Araip.B1U9G | AT4G36290 |
MORC6 | Aradu.FTZ2T | Araip.B1U9G | AT1G19100 |
SAWADEE HOMEODOMAIN HOMOLOGUE 1 (SHH1) | Aradu.GGI7X | Araip.U8UTV | AT1G15215 |
HISTONE DEACETYLASE 6 (HDA6) | Aradu.L1U3V | Araip.WB197 | AT5G63110 |
JUMONJI 14 (JMJ14) | Aradu.V4R6L | Araip.Z2DN9 | AT4G20400 |
LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 (LDL1) | Aradu.ZV9WQ | Araip.F5V5K | AT1G62830 |
LDL2 | Aradu.9QT6G | Araip.M4152 | AT3G13682 |
UBIQUITIN-SPECIFIC PROTEASE 26 (UBP26) | Aradu.A0F5T | Araip.R2ZRV | AT3G49600 |
NEEDED FOR RDR2.INDEPENDENT DNA METHYLATION (NERD) | Aradu.EB2 7 U | Araip.FJ8IU | AT2G16485 |
CHROMOMETHYLASE 2 (CMT2) | Aradu.6W0PK | Araip.71XM6 | AT4G19020 |
CMT3 | Aradu.34YIE | Araip.527SE | AT1G69770 |
METHYLTRANSFERASE 1 (MET1) | Aradu.GN4F8 | Araip.RYZ61 | AT5G49160 |
SUVH4 | Aradu.I17CD | Araip.A9GQY | AT5G13960 |
DECREASED DNA METHYLATION 1 (DDM1) | Aradu.LCP0L | Araip.5QZ4M | AT5G66750 |
CHROMOMETHYLASE 2 (CMT2) | Aradu.6W0PK | Araip.71XM6 | AT4G19020 |
METHYLTRANSFERASE 1 (MET1) | Aradu.GN4F8 | Araip.RYZ61 | AT5G49160 |
DME | Aradu.GHV73 | Araip.81XFD | AT5G04560 |