Skip to main content

Table 1 Characteristics of the putative cotton GSK genes

From: Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress

Subfamily

Gene ID

Proposed name

Amino acid length

MW (KDa)

PI

Subcellular location

Location

Clade I

Gh_D11G2830

GhSK11

407

46.20

8.59

Cyto_Nucl_Memb

D24: 58071261–58,074,075(−)

Gh_A11G3270

GhSK12

407

46.20

8.59

Cyto_Nucl_Memb

Scaf3045_A11: 160892–163,705(−)

Gh_A12G1106

GhSK13

409

46.41

8.69

Cyto_Nucl_Memb

A12: 64114146–64,116,909(+)

Gh_D12G1230

GhSK14

409

46.31

8.58

Cyto_Nucl_Memb

D25: 40170076–40,172,846(+)

Ga11G0763

GaSK11

407

46.23

8.59

Cyto_Nucl_Memb

Ga11:13088074–13,090,884(+)

Ga12G1683

GaSK12

409

46.37

8.58

Cyto_Nucl_Memb

Ga12:26213850–26,216,616(+)

Gorai.007G308500.1

GrSK11

407

46.20

8.59

Cyto_Nucl_Memb

Gr07:52192786–52,197,103(−)

Gorai.007G308500.3

GrSK11–1

407

46.20

8.59

Cyto_Nucl_Memb

Gr07:52192786–52,197,103(−)

Gorai.008G136600.1

GrSK12

409

46.36

8.58

Cyto_Nucl_Memb

Gr08:38585110–38,589,107(+)

Clade II

Gh_D06G2142

GhSK21

381

43.24

8.74

Cyto_Nucl_Memb

D19:63261021–63,263,915(−)

Gh_D09G2469

GhSK22

382

43.10

8.74

Cyto_Nucl_Memb

Scaf4332_D22:137949–141,233(−)

Gh_D09G2468

GhSK23

381

43.38

8.83

Cyto_Nucl_Memb

Scaf4332_D22:123124–126,295(−)

Gh_A09G0713

GhSK24

381

43.32

9.02

Cyto_Nucl_Memb

A09:52861382–52,864,569(+)

Gh_A09G0712

GhSK25

376

42.64

8.88

Cyto_Nucl_Memb

A09:52841598–52,844,894(+)

Gh_A06G2020

GhSK26

385

43.72

8.69

Cyto_Nucl_Memb

Scaf1340_A06:43052–45,877(+)

Ga06G2433

GaSK21

381

43.24

8.74

Cyto_Nucl_Memb

Ga06:130210718–130,213,627(+)

Ga09G0899

GaSK22

376

42.59

8.84

Cyto_Nucl_Memb

Ga09:59971361–59,974,663(+)

Ga09G0900

GaSK23

382

43.55

8.89

Cytoplasmic

Ga09:59988594–59,991,790(+)

Gorai.010G241600.3

GrSK21

381

43.24

8.74

Cyto_Nucl_Memb

Gr10:61087060–61,090,705(−)

Gorai.010G241600.2

GrSK21–1

381

43.24

8.74

Cyto_Nucl_Memb

Gr10:61085419–61,090,069(−)

Gorai.006G089300.1

GrSK22

382

43.22

8.74

Cyto_Nucl_Memb

Gr06:32530678–32,535,037(+)

Gorai.006G089300.2

GrSK22–1

381

43.10

8.74

Cyto_Nucl_Memb

Gr06:32530521–32,535,037(+)

Gorai.006G089400.1

GrSK23

381

43.34

8.74

Cyto_Nucl_Memb

Gr06:32546669–32,551,023(+)

Clade III

Gh_A08G0285

GhSK31

469

52.95

8.75

Cyto_Nucl_Memb

A08:3329052–3,334,479(−)

Gh_D08G1440

GhSK32

471

53.14

8.38

Cyto_Nucl_Memb

D21:47361120–47,366,590(+)

Gh_D11G0907

GhSK33

470

53.00

7.27

Cyto_Nucl_Memb

D24:7839230–7,844,650(+)

Gh_A08G1158

GhSK34

471

53.06

8.2

Cyto_Nucl_Memb

A08:81021333–81,025,764(+)

Gh_A11G0778

GhSK35

470

52.87

6.81

Cyto_Nucl_Memb

A11:7649123–7,654,545(+)

Gh_D08G0378

GhSK36

494

55.85

8.99

Cyto_Nucl_Memb

D21:3871236–3,880,133(−)

Ga08G0389

GaSK31

469

52.95

8.2

Cyto_Nucl_Memb

Ga08:4054818–4,060,304(−)

Ga11G3164

GaSK32

470

52.88

7

Cyto_Nucl_Memb

Ga11:116299523–116,304,934(−)

Ga08G1552

GaSK33

471

53.10

8.2

Cyto_Nucl_Memb

Ga08:103960877–103,965,308(+)

Gorai.004G042400.1

GrSK31

469

52.97

8.86

Cyto_Nucl_Memb

Gr04:3659148–3,665,477(−)

Gorai.007G096100.1

GrSK32

470

53.04

7.6

Cyto_Nucl_Memb

Gr07:7076952–7,083,244(+)

Gorai.004G156700.2

GrSK33

415

47.04

8.21

Cyto_Nucl_Memb

Gr04:44445510–44,453,846(+)

Clade IV

Gh_A01G1558

GhSK41

422

47.85

8.63

Cyto_Nucl_Memb

A01:92410497–92,413,873(+)

Gh_D01G1809

GhSK42

422

47.85

8.63

Cyto_Nucl_Memb

D14:55472543–55,475,936(+)

Gh_D12G0407

GhSK43

422

47.90

8.49

Cyto_Nucl_Memb

D25:6533937–6,537,332(−)

Gh_A12G0411

GhSK44

422

47.87

8.49

Cyto_Nucl_Memb

A12:8244999–8,248,430(−)

Ga02G1328

GaSK41

422

47.84

8.63

Cyto_Nucl_Memb

Ga02:91572951–91,576,357(+)

Ga12G2665

GaSK42

439

50.02

8.68

Cyto_Nucl_Memb

Ga12:98904726–98,909,799(−)

Gorai.002G218100.1

GrSK41

422

47.85

8.63

Cyto_Nucl_Memb

Gr02:56980865–56,985,951(+)

Gorai.008G045800.6

GrSK42

422

47.89

8.49

Cyto_Nucl_Memb

Gr08:6198704–6,202,924(−)

Gorai.008G045800.3

GrSK42–1

422

47.89

8.49

Cyto_Nucl_Memb

Gr08:6198649–6,203,828(−)

Gorai.008G045800.2

GrSK42–2

422

47.89

8.49

Cyto_Nucl_Memb

Gr08:6198649–6,203,828(−)