Table 6 Multi-phenotype SNPs and multi-phenotype loci information for 21 chlorophyll fluorescence phenotypes
Multi Phenotype SNP | Marker | Site | Chromosome | Multi Phenotype locus | # Traits | Phenotypes |
|---|---|---|---|---|---|---|
1 | ss715578706 | 2,194,371 | 1 | 1 | 3 | FJ, F0, M0 |
2 | ss715582243 | 4,188,852 | 2 | 2 | 3 | FI, FJ, FM |
3 | ss715588144 | 45,019,738 | 4 | 3 | 3 | FV/FM, φDo, φPo |
4 | ss715598351 | 5,523,614 | 7 | 4 | 4 | M0, φEo, ψ0, VJ |
5 | ss715602131 | 43,896,715 | 8 | 5 | 4 | φEo, PIABS, ψ0, VJ |
6 | ss715606550 | 37,824,499 | 10 | 6 | 5 | ABS/RC, DI0/RC, M0, φEo, VJ |
7 | ss715611132 | 7,673,775 | 11 | 7 | 5 | ABS/RC, DI0/RC, FV/FM, φDo, φPo |
8 | ss715611140 | 7,753,142 |  |  | 7 | ABS/RC, DI0/RC, FM/F0, FV/FM, FV/F0, φDo, φPo |
9 | ss715611141 | 7,763,083 |  |  | 5 | ABS/RC, DI0/RC, FV/FM, φDo, φPo |
10 | ss715611188 | 8,100,166 |  |  | 7 | DI0/RC, FM/F0, FV/FM, FV/F0, φDo, φPo, PIABS |
11 | ss715611189 | 8,100,210 |  |  | 7 | DI0/RC, FM/F0, FV/FM, FV/F0, φDo, φPo, PIABS |
12 | ss715613004 | 3,977,509 | 12 | 8 | 6 | FM/F0, FV/F0, M0, φEo, ψ0, VJ |
13 | ss715613007 | 3,981,255 |  |  | 7 | ET0/RC, FM/F0, FV/F0, M0, φEo, ψ0, VJ |
14 | ss715613098 | 4,570,804 |  |  | 5 | ET0/RC, M0, φEo, ψ0, VJ |
15 | ss715613099 | 4,571,455 |  |  | 5 | ET0/RC, M0, φEo, ψ0, VJ |
16 | ss715613101 | 4,592,714 |  |  | 3 | ET0/RC, ψ0, VJ |
17 | ss715613103 | 4,599,923 |  |  | 3 | M0, ψ0, VJ |
18 | ss715615442 | 33,647,377 | 13 | 9 | 3 | FI, FM, TR0/RC |
19 | ss715616214 | 40,597,986 |  | 10 | 6 | ET0/RC, FM/F0, FV/F0, φEo, ψ0, VJ |
20 | ss715622432 | 49,050,145 | 15 | 11 | 3 | ET0/RC, ψ0, VJ |
21 | ss715627511 | 38,693,686 | 17 | 12 | 3 | FI, FJ, TR0/RC |
22 | ss715635516 | 45,602,382 | 19 | 13 | 3 | FI, FM, FV |
23 | ss715635520 | 45,643,073 | Â | Â | 3 | FI, FM, FV |
24 | ss715635524 | 45,670,756 | Â | Â | 3 | FM/F0, FV, FV/F0 |
25 | ss715635529 | 45,771,542 |  |  | 9 | ET0/RC, FI, FM, FM/F0, FV, FV/FM, FV/F0, φDo, φPo |
26 | ss715635531 | 45,785,358 |  |  | 9 | ET0/RC, FI, FM, FM/F0, FV, FV/FM, FV/F0, φDo, φPo |
27 | ss715635532 | 45,790,916 |  |  | 8 | FI, FM, FM/F0, FV, FV/FM, FV/F0, φDo, φPo |