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Table 2 Summary of RNA sequencing for 12 accessions of Ae. umbellulata

From: RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata

Accession Read
pairs
Filtered
read pairs (%a)
(unigenes) N50
(bp)
Median contig length
(bp)
Total assembled bases
(Mbp)
KU-4017 3,738,403 2,515,683 (67.29%) 39,359
(37640)
1238 658 36
KU-4026 4,935,634 3,429,252 (69.48%) 20,996
(20675)
900 578.5 15.6
KU-4035 6,077,268 3,890,911 (64.02%) 57,029
(52216)
1350 654 52.9
KU-4043 4,090,151 2,392,708 (58.50%) 50,985
(48590)
1095 518 38.9
KU-4052 3,829,992 2,152,503 (56.20%) 47,320
(44869)
1179 577 39.4
KU-4103 3,875,477 2,506,545 (64.68%) 31,418
(30873)
899 507 22.1
KU-5934 5,114,283 3,507,234 (68.58%) 57,466
(52751)
1332 630 52.7
KU-5954 3,686,807 2,694,916 (73.10%) 45,164
(41780)
1365 699 44.1
KU-12180 3,455,952 2,560,779 (74.10%) 46,323
(44000)
1229 631 41.2
KU-12198 3,623,492 2,666,981 (73.60%) 50,069
(46178)
1359 655 47,7
KU-8-5 3,669,766 2,699,452 (73.56%) 52,648
(48981)
1259 654 48.2
KU-8-7 3,798,153 2,524,378 (66.46%) 59,253
(55831)
1160 524 46.9
  1. aPercentage of the number of filtered read pairs per the number of read pairs