QTL detection for growth and latex production in a full-sib rubber tree population cultivated under suboptimal climate conditions

Table 1 Origin and nature of the molecular markers used to construct the genetic linkage map

Initial name	Marker	Library Type	Sequencing method	Reference	Genotyping Technology	Genotyped markers	Mapped markers
a, A, T, TAs	SSR	Enriched genomic library	Sanger	Le Guen et al. (2011) [11]	LI-COR 4300 DNA Analyzer	184	177
HBE	SSR	EST library	Sanger	Feng et al. (2009) [50]	Silver staining on acrylamide gels	58	58
EHB	SSR	EST library	Sanger	Silva et al. (2014) [17]	LI-COR 4300, silver staining, Advance	50	49
HB	SSR	Enriched genomic library	Sanger	Souza et al. (2009) [62] Mantello et al. (2012) [63]	Silver staining on acrylamide gels	64	62
SSH	SSR	SSH libraries	Sanger	Cubry et al. (2014) [49]	ABI 3500 xL Genetic Analyzer	6	6
HV	SSR	GenBank Nucleotide	Sanger	Gouvêa et al. (2010) [51]	Silver staining on acrylamide gels	2	2
					sub-total SSRs	364	354
Hb_seq_	SNP	RNA-seq	GAIIx, Illumina	This paper	Mass Array Analyzer, Sequenom	105	72
sHbUNI	SNP	RNA-seq and genomic library	GAIIx, Illumina	Mantello et al. (2014) [16], Souza et al. (2016) [64]	Fluidigm, BioMark HD	21	19
sHbCIR	SNP	RNA-seq	454-Roche	Salgado et al. (2014) [22]	Fluidigm, BioMark HD	65	60
					sub-total SNPs	191	151
					Total	555	505

ISSN: 1471-2229