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Table 6 Details of quantitative trait loci identified for different traits in PR-07 population in repeated tests

From: Construction of high-density linkage maps for mapping quantitative trait loci for multiple traits in field pea (Pisum sativum L.)

Linkage group Trait Station year QTL interval (cM) Flanking markers LOD Add. effecta % phenotypic variance explained
LG1a Neutral detergent fibre (%) 2011 Sutherland 0–2.2 Sc1316_98199 - PsC8516p155 7.25 − 0.34 14.03
LG1a Seed starch conc. (%) 2011 Sutherland 1.5–4.6 Sc1316_97901 - Sc5782_95080 6.09 0.55 16.80
LG1a Neutral detergent fibre (%) 2010 Rosthern 4.5–5.7 Sc1316_97909 - Sc2440_78270 4.76 0.25 14.72
LG1a Neutral detergent fibre (%) 2012 Sutherland 5.6–9.5 Sc7994_73924 - Sc517_350146 19.46 −0.67 43.99
LG1a Seed starch conc. (%) 2011 Rosthern 5.7–9.4 Sc7994_73924 - Sc517_350146 6.00 0.58 14.83
LG1a Neutral detergent fibre (%) 2012 Rosthern 5.7–9.5 Sc2440_78270 - Sc517_350146 14.72 −0.57 38.76
LG1a Seed starch conc. (%) 2012 Sutherland 5.7–9.5 Sc7994_73924 - Sc517_350146 7.57 0.58 19.03
LG1a Neutral detergent fibre (%) 2011 Rosthern 5.8–9.5 Sc7994_73924 - Sc517_350146 13.61 −0.55 32.03
LG1a Seed starch conc. (%) 2012 Rosthern 5.8–9.5 Sc7994_73924 - Sc517_350146 7.56 0.70 17.77
LG1a Neutral detergent fibre (%) 2010 Sutherland 36.7–38.4 PsC8521p283 - PsC25275p166 3.72 0.54 11.01
LG1a Neutral detergent fibre (%) 2011 Sutherland 68.9–69.7 Sc22110_2677 - PsC20147p80 3.32 −0.23 6.36
LG1a Seed starch conc. (%) 2011 Sutherland 71.5–74.4 Sc5691_331806 - PsC9531p143 5.03 −0.52 13.51
LG3b Days to flowering 2012 Rosthern 0–2.0 Sc9618_162688 - Sc12123_74766 4.13 −0.43 14.54
LG3b Mycosphaerella resistanceb 2010 Sutherland 9.2–12.6 PsC1846p336 - Sc5317_256613 3.89 3.75 10.46
LG3b Lodging resistance (1–9) 2012 Sutherland 32.1–39.7 PsC21425p211 - Sc3030_71736 4.07 0.28 13.59
LG3b Plant height (cm) 2011 Rosthern 40.2–50.7 Sc3030_71736 - PsC7000p195 16.17 −0.83 46.36
LG3b Plant height (cm) 2012 Rosthern 40.2–50.7 Sc3030_71736 - PsC7000p195 20.52 −9.90 50.43
LG3b Mycosphaerella resistance 2012 Rosthern 40.4–50.6 Sc3030_71736 - PsC7000p195 8.85 10.60 26.29
LG3b Mycosphaerella resistance 2011 Sutherland 41.0–50.6 Sc3030_71736 - PsC7000p195 7.76 5.60 22.12
LG3b Days to flowering 2011 Sutherland 44.5–50.6 Sc3030_71736 - PsC7000p195 4.99 −0.30 12.49
LG3b Mycosphaerella resistance 2012 Sutherland 49.5–52.5 Sc8865_149928 - Sc7388_112888 3.54 −4.53 10.70
LG3b Seed iron conc. (ppm) 2012 Rosthern 53.1–68.7 Sc3120_148299 - PsC18899p425 10.05 −2.64 35.52
LG3b Seed iron conc. (ppm) 2011 Rosthern 53.2–68.8 Sc3120_148299 - PsC18899p425 4.56 −1.59 17.69
LG3b Seed iron conc. (ppm) 2011 Sutherland 55.8–68.6 Sc3120_148299 - PsC18899p425 2.89 −1.10 10.85
LG3b Plant height (cm) 2012 Sutherland 61.3–71.0 Sc3132_175238 - Sc3132_175237 23.82 −14.00 56.74
LG3b Plant height (cm) 2011 Sutherland 61.3–71.1 Sc3132_175238 - Sc3132_175237 11.89 −7.87 25.63
LG3b Yield (g/m2) 2010 Sutherland 61.5–71.1 Sc3132_175238 - Sc3132_175237 9.24 88.50 27.38
LG3b Seed starch conc. (%) 2011 Rosthern 61.5–71.2 Sc3132_175238 - Sc3132_175237 7.05 0.66 17.22
LG3b Yield (g/m2) 2012 Sutherland 61.8–71.1 Sc3132_175238 - Sc3132_175237 6.79 40.50 22.62
LG3b Lodging resistance (1–9) 2010 Rosthern 62.8–71.1 Sc3132_175238 - Sc3132_175237 6.85 0.55 19.34
LG3b Seed iron conc. (ppm) 2010 Sutherland 63.0–70.6 Sc3132_175238 - Sc3132_175237 4.13 −1.94 15.43
LG3b Seed zinc conc. (ppm) 2012 Rosthern 63.8–70.8 Sc3132_175238 - Sc3132_175237 4.48 −1.42 12.98
LG3b Seed Protein conc. (%) 2011 Rosthern 63.9–70.6 Sc3132_175238 - Sc3132_175237 3.84 −0.33 10.09
LG3b Seed zinc conc. (ppm) 2010 Sutherland 64.4–70.8 Sc3132_175238 - Sc3132_175237 4.48 −1.48 9.06
LG3b Seed starch conc. (%) 2012 Sutherland 67.1–71.1 PsC18899p425 - Sc3132_175237 3.27 0.43 7.94
LG3b Seed iron conc. (ppm) 2010 Rosthern 71.0–77.2 Sc3132_175237 - Sc2404_224246 10.14 −3.26 34.14
LG3b Plant height (cm) 2010 Rosthern 71.1–73.9 Sc3132_175237 - Sc760_198502 23.80 −9.00 62.90
LG3b Seed starch conc. (%) 2010 Rosthern 71.1–74.4 Sc3132_175237 - Sc760_198502 4.03 0.40 9.62
LG3b Plant height (cm) 2010 Sutherland 71.1–74.8 Sc3132_175237 - Sc10190_11329 15.74 −5.67 42.98
LG3b Seed zinc conc. (ppm) 2011 Rosthern 71.2–74.6 Sc3132_175237 - Sc10190_11329 4.09 −1.11 9.93
LG3b Lodging resistance (1–9) 2010 Sutherland 71.2–74.8 Sc3132_175237 - Sc10190_11329 13.19 0.59 35.29
LG3b Yield (g/m2) 2011 Sutherland 71.7–74.4 Sc3132_175237 - Sc760_198502 3.75 32.21 10.88
LG3b Days to flowering 2011 Rosthern 71.9–73.8 Sc3132_175237 - PsC17710p220 3.00 0.82 8.62
LG3b Lodging resistance (1–9) 2011 Sutherland 72.9–74.7 Sc3132_175237 - Sc10190_11329 3.43 −0.52 11.19
LG3b Yield (g/m2) 2011 Rosthern 77.5–80.3 Sc2404_224246 - Sc7171_17480 14.13 91.50 41.71
LG3b Seed starch conc. (%) 2012 Rosthern 77.7–80.7 Sc2404_224246 - Sc7171_14359 6.37 0.68 14.54
LG3b Seed Protein conc. (%) 2012 Rosthern 78.8–79.6 Sc2655_152859 - Sc7171_17480 4.08 −0.56 15.26
LG3b Yield (g/m2) 2012 Rosthern 78.9–79.6 Sc2655_152859 - Sc7171_17480 4.02 46.84 14.62
LG3b Days to flowering 2010 Rosthern 79.4–80.1 PsC1055p147 - Sc7171_17480 3.09 − 0.79 8.78
LG3b Yield (g/m2) 2012 Rosthern 80.4–81.3 Sc7171_17480 - Sc3260_148260 4.08 34.50 12.22
LG3b Seed zinc conc. (ppm) 2011 Sutherland 82.3–85.8 Sc7171_14359 - Sc1615_201693 6.61 1.26 19.83
LG3b Lodging resistance (1–9) 2012 Rosthern 84.8–87.8 Sc3260_148582 - Sc11336_48797 6.43 0.24 16.46
LG3b Seed zinc conc. (ppm) 2010 Sutherland 87.7–91.0 Sc11336_48840 - PsC17538p106 17.30 3.38 50.13
LG3b Seed zinc conc. (ppm) 2010 Rosthern 87.9–91.1 Sc11336_48840 - PsC17538p106 17.11 2.60 43.21
LG3b Seed zinc conc. (ppm) 2011 Rosthern 87.9–91.1 Sc11336_48840 - PsC3195p368 12.09 2.08 34.90
LG3b Seed zinc conc. (ppm) 2012 Rosthern 88.0–91.0 Sc11336_48840 - PsC17538p106 8.56 2.03 23.92
LG3b Seed iron conc. (ppm) 2010 Rosthern 89.8–91.8 Sc12583_123864 - Sc7419_17372 5.84 2.29 16.86
LG3b Days to flowering 2011 Rosthern 89.9–103.8 Sc12583_123864 - PsC7922p456 4.80 −0.58 16.21
LG3b Seed iron conc. (ppm) 2012 Sutherland 90.7–96.8 Sc12583_123864 - PsC7922p456 4.04 −2.33 17.35
LG3b Seed Protein conc. (%) 2010 Sutherland 117.2–117.5 PsC17621p214c 3.16 0.33 9.61
LG3C Seed starch conc. (%) 2011 Rosthern 7.1–9.5 Sc3749_108190 - Sc2879_47145 3.40 0.40 7.06
LG3C Seed starch conc. (%) 2011 Sutherland 7.1–9.5 Sc3749_108190 - Sc2879_47145 4.39 0.46 11.58
LG3C Seed starch conc. (%) 2012 Sutherland 12.4–15.6 PsC14740p177 - Sc7592_10748 4.73 0.45 11.03
LG3c Seed shape (1–5) 2011 Rosthern 13.8–16.3 PsC14740p177 - PsC6804p417 8.29 −0.22 22.14
LG3C 1000 seed weight (g) 2010 Sutherland 15.5–18.1 Sc15898_5876 - Sc5634_248952 14.51 −14.20 37.83
LG3C 1000 seed weight (g) 2012 Rosthern 15.5–18.1 Sc15898_5876 - Sc5634_248952 15.57 −18.12 40.02
LG3C 1000 seed weight (g) 2011 Rosthern 15.6–18.9 Sc15898_5876 - Sc3846_98653 11.69 −12.47 32.08
LG3c Seed shape (1–5) 2012 Rosthern 15.7–17.9 Sc15898_5876 - Sc5634_248952 7.65 − 0.18 17.91
LG3c Seed shape (1–5) 2011 Sutherland 15.9–17.8 Sc7592_10748 - Sc5634_248952 4.56 −0.15 14.03
LG3C Seed starch conc. (%) 2012 Rosthern 16.9–17.3 PsC6804p417 - Sc7506_85661 3.76 0.45 8.00
LG3C 1000 seed weight (g) 2012 Sutherland 17.0–17.3 PsC6804p417 - Sc7506_85661 3.07 −5.17 5.73
LG3c Seed shape (1–5) 2010 Rosthern 18.0–21.4 Sc7506_85661 - Sc1034_397114 8.57 −0.20 19.73
LG3c Seed shape (1–5) 2012 Sutherland 18.3–21.0 Sc5634_248952 - Sc1034_397114 3.71 −0.13 8.82
LG3c Seed shape (1–5) 2010 Sutherland 22.5–25.2 Sc5236_240350 - Sc3776_72623 8.30 −0.24 21.88
LG3C 1000 seed weight (g) 2010 Rosthern 29.1–32.8 PsC17990p348 - Sc5017_107595 11.38 −10.80 26.22
LG4 Acid detergent fibre (%) 2010 Rosthern 46.9–54.9 Sc14252_54211 - PsC9619p120 6.42 12.41 12.41
LG4 Acid detergent fibre (%) 2011 Sutherland 47.1–55.1 Sc14773_9078 - PsC9619p120 4.74 0.20 11.43
LG4 Yield (g/m2) 2012 Sutherland 55.4–57.3 PsC9619p120 - PsC8649p435 3.10 −24.70 9.68
LG4 Acid detergent fibre (%) 2011 Rosthern 55.4–57.7 PsC9619p120 - PsC8027p461 4.92 0.30 13.80
LG4 1000 seed weight (g) 2010 Rosthern 74.2–78.7 Sc11957_111590 - PsC17119p75 4.00 5.85 7.80
LG4 1000 seed weight (g) 2011 Sutherland 86.2–87.2 PsC2962p250 - Sc29_745213 3.05 7.08 6.80
LG4 Acid detergent fibre (%) 2010 Rosthern 112.4–115.6 Sc16937_64085 - Sc13643_109377 6.55 12.39 12.39
LG4 Neutral detergent fibre (%) 2011 Sutherland 114.0–117.7 PsC8606p327 - Sc3118_133217 5.97 −0.33 12.34
LG4 Neutral detergent fibre (%) 2011 Rosthern 121.0–124.6 PsC3839p347 - Sc6758_108549 5.84 −0.34 12.41
LG4 Acid detergent fibre (%) 2012 Rosthern 125.0–127.9 Sc6758_108549 - Sc15127_41344 6.22 −0.19 18.65
LG4 Neutral detergent fibre (%) 2012 Sutherland 125.0–127.9 PsC11200p246 - Sc15127_41344 6.95 −0.33 11.29
LG4 Neutral detergent fibre (%) 2012 Rosthern 125.1–128.1 PsC11200p246 - PsC6805p316 6.94 −0.36 14.47
LG4 Yield (g/m2) 2012 Rosthern 125.3–127.9 PsC11200p246 - Sc15127_41344 4.12 42.50 12.14
LG4 Yield (g/m2) 2010 Sutherland 164.1–164.4 PsC5648p575 - Sc14535_27663 3.02 35.90 7.72
LG4 1000 seed weight (g) 2010 Rosthern 171.5–174.8 PsC6387p181 - Sc10124_24989 6.84 7.89 13.98
LG4 1000 seed weight (g) 2010 Sutherland 190.1–192.2 Sc11207_89502 - Sc2978_155562 3.83 6.32 7.43
LG4 1000 seed weight (g) 2011 Rosthern 190.8–192.2 Sc1136_367986 - Sc2978_155562 3.05 5.91 7.26
LG5a Seed dimpling (%) 2010 Rosthern 2.2–6.2 Sc8473_10944 - PsC12889p283 9.14 5.26 29.19
LG5a Seed dimpling (%) 2010 Sutherland 2.2–6.2 Sc8473_10944 - PsC12889p283 8.85 6.94 27.10
LG5a Seed dimpling (%) 2011 Sutherland 2.2–6.2 Sc8473_10944 - PsC12889p283 9.02 3.19 28.03
LG5a Seed dimpling (%) 2012 Sutherland 2.3–6.3 Sc8473_10944 - PsC12889p283 9.53 5.05 28.71
LG5a Seed dimpling (%) 2012 Rosthern 2.5–6.3 Sc8473_10944 - PsC12889p283 10.37 8.20 25.69
LG5a Seed dimpling (%) 2011 Rosthern 2.6–6.2 PsC22556p240 - PsC12889p283 4.12 3.10 12.67
LG6 1000 seed weight (g) 2011 Rosthern 11.4–12.9 PsC16439p299 - Sc15567_7204 3.33 6.07 7.65
LG6 1000 seed weight (g) 2010 Rosthern 118.5–120.3 Sc5637_275649 - Sc2500_201045 3.75 −5.54 7.07
LG6 1000 seed weight (g) 2010 Sutherland 131.5–134.8 PsC25597p337 - Sc10413_115004 4.35 −6.84 8.76
LG6 1000 seed weight (g) 2012 Sutherland 132.0–134.0 Sc3067_13865 - Sc10413_115004 3.33 −4.31 6.43
LG7a Seed shape (1–5) 2012 Sutherland 0–0.9 Sc634_50791 - PsC21074p390 6.29 0.17 15.70
LG7a Seed zinc conc. (ppm) 2012 Rosthern 0–1.7 Sc634_50791 - Sc5630_137578 4.61 1.64 11.65
LG7a Seed zinc conc. (ppm) 2010 Sutherland 0–1.8 Sc634_50791 - Sc9049_101804 5.85 1.61 11.41
LG7a Neutral detergent fibre (%) 2011 Rosthern 0–1.8 Sc634_50791 - Sc9049_101804 3.63 0.24 6.40
LG7a Yield (g/m2) 2010 Sutherland 0–1.9 Sc634_50791 - Sc9049_101804 5.58 −49.80 15.11
LG7a Seed shape (1–5) 2011 Rosthern 0–1.9 Sc634_50791 - Sc9049_101804 6.48 −0.19 16.42
LG7a Neutral detergent fibre (%) 2011 Sutherland 0–1.9 Sc634_50791 - Sc9049_101804 5.05 0.29 9.91
LG7a Seed shape (1–5) 2010 Sutherland 0–2.0 Sc634_50791 - Sc9049_101804 7.87 0.22 20.62
LG7a Seed starch conc. (%) 2011 Rosthern 0–2.0 Sc634_50791 - Sc9049_101804 8.39 −0.68 20.10
LG7a Acid detergent fibre (%) 2011 Sutherland 0–2.0 Sc634_50791 - Sc9049_101804 4.95 0.19 11.27
LG7a Seed shape (1–5) 2012 Rosthern 0.3–2.6 Sc634_50791 - Sc5048_78539 8.46 0.19 20.23
LG7a Acid detergent fibre (%) 2011 Rosthern 0.5–2.5 PsC14542p181 - Sc5048_78539 5.15 0.15 14.53
LG7a Yield (g/m2) 2012 Sutherland 2.7–5.1 Sc5048_78539 - Sc13836_25493 3.98 −36.70 12.53
LG7a Seed starch conc. (%) 2012 Sutherland 5.2–8.0 Sc13836_25493 - PsC13063p113 6.60 −0.53 16.09
LG7a Seed starch conc. (%) 2012 Rosthern 5.8–6.4 PsC17565p62 - PsC894p666 3.56 −0.28 7.58
LG7a Seed starch conc. (%) 2010 Rosthern 5.9–6.6 PsC17565p62 - PsC6197p84 3.33 −0.34 10.82
LG7a Seed zinc conc. (ppm) 2010 Rosthern 10.3–12.3 Sc1295_349656 - Sc3544_82453 3.67 0.75 6.34
LG7a Yield (g/m2) 2011 Sutherland 15.6–16.8 Sc5607_100908 - PsC4676p597 3.10 −27.50 8.95
LG7a Acid detergent fibre (%) 2012 Sutherland 17.2–20.5 Sc5607_100934 - Sc18622_41612 5.32 0.15 14.04
LG7a Neutral detergent fibre (%) 2012 Sutherland 20.8–24.6 Sc18622_41612 - PsC5078p112 5.12 0.30 8.10
LG7b Seed protein conc. (%) 2010 Sutherland 25.2–27.1 Sc20361_14817 - Sc3324_313865 3.31 −0.34 10.13
LG7b Seed protein conc. (%) 2010 Rosthern 25.6–28.1 Sc20361_14817 - Sc3324_313865 3.88 −0.41 12.96
LG7b Seed protein conc. (%) 2011 Sutherland 42.6–43.3 Sc8615_6507 - Sc986_91465 3.16 −0.32 9.82
LG7b Seed protein conc. (%) 2012 Sutherland 86.5–87.0 PsC6994p243 - PsC6313p125 3.14 −0.31 9.28
  1. Details of QTLs that were identified on the same linkage group in at least 50% of the trials were only listed
  2. aAdditive effect. Any positive value of additive effect indicates that the trait alleles are from Carerra and the negative additive effect indicates the trait alleles are from CDC Striker
  3. bThis flanking marker represents the centre of this 0.3 cM QTL region
  4. cMycosphaerella resistance is measured as area under disease progress curve (AUDPC)