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Table 6 Details of quantitative trait loci identified for different traits in PR-07 population in repeated tests

From: Construction of high-density linkage maps for mapping quantitative trait loci for multiple traits in field pea (Pisum sativum L.)

Linkage group

Trait

Station year

QTL interval (cM)

Flanking markers

LOD

Add. effecta

% phenotypic variance explained

LG1a

Neutral detergent fibre (%)

2011 Sutherland

0–2.2

Sc1316_98199 - PsC8516p155

7.25

− 0.34

14.03

LG1a

Seed starch conc. (%)

2011 Sutherland

1.5–4.6

Sc1316_97901 - Sc5782_95080

6.09

0.55

16.80

LG1a

Neutral detergent fibre (%)

2010 Rosthern

4.5–5.7

Sc1316_97909 - Sc2440_78270

4.76

0.25

14.72

LG1a

Neutral detergent fibre (%)

2012 Sutherland

5.6–9.5

Sc7994_73924 - Sc517_350146

19.46

−0.67

43.99

LG1a

Seed starch conc. (%)

2011 Rosthern

5.7–9.4

Sc7994_73924 - Sc517_350146

6.00

0.58

14.83

LG1a

Neutral detergent fibre (%)

2012 Rosthern

5.7–9.5

Sc2440_78270 - Sc517_350146

14.72

−0.57

38.76

LG1a

Seed starch conc. (%)

2012 Sutherland

5.7–9.5

Sc7994_73924 - Sc517_350146

7.57

0.58

19.03

LG1a

Neutral detergent fibre (%)

2011 Rosthern

5.8–9.5

Sc7994_73924 - Sc517_350146

13.61

−0.55

32.03

LG1a

Seed starch conc. (%)

2012 Rosthern

5.8–9.5

Sc7994_73924 - Sc517_350146

7.56

0.70

17.77

LG1a

Neutral detergent fibre (%)

2010 Sutherland

36.7–38.4

PsC8521p283 - PsC25275p166

3.72

0.54

11.01

LG1a

Neutral detergent fibre (%)

2011 Sutherland

68.9–69.7

Sc22110_2677 - PsC20147p80

3.32

−0.23

6.36

LG1a

Seed starch conc. (%)

2011 Sutherland

71.5–74.4

Sc5691_331806 - PsC9531p143

5.03

−0.52

13.51

LG3b

Days to flowering

2012 Rosthern

0–2.0

Sc9618_162688 - Sc12123_74766

4.13

−0.43

14.54

LG3b

Mycosphaerella resistanceb

2010 Sutherland

9.2–12.6

PsC1846p336 - Sc5317_256613

3.89

3.75

10.46

LG3b

Lodging resistance (1–9)

2012 Sutherland

32.1–39.7

PsC21425p211 - Sc3030_71736

4.07

0.28

13.59

LG3b

Plant height (cm)

2011 Rosthern

40.2–50.7

Sc3030_71736 - PsC7000p195

16.17

−0.83

46.36

LG3b

Plant height (cm)

2012 Rosthern

40.2–50.7

Sc3030_71736 - PsC7000p195

20.52

−9.90

50.43

LG3b

Mycosphaerella resistance

2012 Rosthern

40.4–50.6

Sc3030_71736 - PsC7000p195

8.85

10.60

26.29

LG3b

Mycosphaerella resistance

2011 Sutherland

41.0–50.6

Sc3030_71736 - PsC7000p195

7.76

5.60

22.12

LG3b

Days to flowering

2011 Sutherland

44.5–50.6

Sc3030_71736 - PsC7000p195

4.99

−0.30

12.49

LG3b

Mycosphaerella resistance

2012 Sutherland

49.5–52.5

Sc8865_149928 - Sc7388_112888

3.54

−4.53

10.70

LG3b

Seed iron conc. (ppm)

2012 Rosthern

53.1–68.7

Sc3120_148299 - PsC18899p425

10.05

−2.64

35.52

LG3b

Seed iron conc. (ppm)

2011 Rosthern

53.2–68.8

Sc3120_148299 - PsC18899p425

4.56

−1.59

17.69

LG3b

Seed iron conc. (ppm)

2011 Sutherland

55.8–68.6

Sc3120_148299 - PsC18899p425

2.89

−1.10

10.85

LG3b

Plant height (cm)

2012 Sutherland

61.3–71.0

Sc3132_175238 - Sc3132_175237

23.82

−14.00

56.74

LG3b

Plant height (cm)

2011 Sutherland

61.3–71.1

Sc3132_175238 - Sc3132_175237

11.89

−7.87

25.63

LG3b

Yield (g/m2)

2010 Sutherland

61.5–71.1

Sc3132_175238 - Sc3132_175237

9.24

88.50

27.38

LG3b

Seed starch conc. (%)

2011 Rosthern

61.5–71.2

Sc3132_175238 - Sc3132_175237

7.05

0.66

17.22

LG3b

Yield (g/m2)

2012 Sutherland

61.8–71.1

Sc3132_175238 - Sc3132_175237

6.79

40.50

22.62

LG3b

Lodging resistance (1–9)

2010 Rosthern

62.8–71.1

Sc3132_175238 - Sc3132_175237

6.85

0.55

19.34

LG3b

Seed iron conc. (ppm)

2010 Sutherland

63.0–70.6

Sc3132_175238 - Sc3132_175237

4.13

−1.94

15.43

LG3b

Seed zinc conc. (ppm)

2012 Rosthern

63.8–70.8

Sc3132_175238 - Sc3132_175237

4.48

−1.42

12.98

LG3b

Seed Protein conc. (%)

2011 Rosthern

63.9–70.6

Sc3132_175238 - Sc3132_175237

3.84

−0.33

10.09

LG3b

Seed zinc conc. (ppm)

2010 Sutherland

64.4–70.8

Sc3132_175238 - Sc3132_175237

4.48

−1.48

9.06

LG3b

Seed starch conc. (%)

2012 Sutherland

67.1–71.1

PsC18899p425 - Sc3132_175237

3.27

0.43

7.94

LG3b

Seed iron conc. (ppm)

2010 Rosthern

71.0–77.2

Sc3132_175237 - Sc2404_224246

10.14

−3.26

34.14

LG3b

Plant height (cm)

2010 Rosthern

71.1–73.9

Sc3132_175237 - Sc760_198502

23.80

−9.00

62.90

LG3b

Seed starch conc. (%)

2010 Rosthern

71.1–74.4

Sc3132_175237 - Sc760_198502

4.03

0.40

9.62

LG3b

Plant height (cm)

2010 Sutherland

71.1–74.8

Sc3132_175237 - Sc10190_11329

15.74

−5.67

42.98

LG3b

Seed zinc conc. (ppm)

2011 Rosthern

71.2–74.6

Sc3132_175237 - Sc10190_11329

4.09

−1.11

9.93

LG3b

Lodging resistance (1–9)

2010 Sutherland

71.2–74.8

Sc3132_175237 - Sc10190_11329

13.19

0.59

35.29

LG3b

Yield (g/m2)

2011 Sutherland

71.7–74.4

Sc3132_175237 - Sc760_198502

3.75

32.21

10.88

LG3b

Days to flowering

2011 Rosthern

71.9–73.8

Sc3132_175237 - PsC17710p220

3.00

0.82

8.62

LG3b

Lodging resistance (1–9)

2011 Sutherland

72.9–74.7

Sc3132_175237 - Sc10190_11329

3.43

−0.52

11.19

LG3b

Yield (g/m2)

2011 Rosthern

77.5–80.3

Sc2404_224246 - Sc7171_17480

14.13

91.50

41.71

LG3b

Seed starch conc. (%)

2012 Rosthern

77.7–80.7

Sc2404_224246 - Sc7171_14359

6.37

0.68

14.54

LG3b

Seed Protein conc. (%)

2012 Rosthern

78.8–79.6

Sc2655_152859 - Sc7171_17480

4.08

−0.56

15.26

LG3b

Yield (g/m2)

2012 Rosthern

78.9–79.6

Sc2655_152859 - Sc7171_17480

4.02

46.84

14.62

LG3b

Days to flowering

2010 Rosthern

79.4–80.1

PsC1055p147 - Sc7171_17480

3.09

− 0.79

8.78

LG3b

Yield (g/m2)

2012 Rosthern

80.4–81.3

Sc7171_17480 - Sc3260_148260

4.08

34.50

12.22

LG3b

Seed zinc conc. (ppm)

2011 Sutherland

82.3–85.8

Sc7171_14359 - Sc1615_201693

6.61

1.26

19.83

LG3b

Lodging resistance (1–9)

2012 Rosthern

84.8–87.8

Sc3260_148582 - Sc11336_48797

6.43

0.24

16.46

LG3b

Seed zinc conc. (ppm)

2010 Sutherland

87.7–91.0

Sc11336_48840 - PsC17538p106

17.30

3.38

50.13

LG3b

Seed zinc conc. (ppm)

2010 Rosthern

87.9–91.1

Sc11336_48840 - PsC17538p106

17.11

2.60

43.21

LG3b

Seed zinc conc. (ppm)

2011 Rosthern

87.9–91.1

Sc11336_48840 - PsC3195p368

12.09

2.08

34.90

LG3b

Seed zinc conc. (ppm)

2012 Rosthern

88.0–91.0

Sc11336_48840 - PsC17538p106

8.56

2.03

23.92

LG3b

Seed iron conc. (ppm)

2010 Rosthern

89.8–91.8

Sc12583_123864 - Sc7419_17372

5.84

2.29

16.86

LG3b

Days to flowering

2011 Rosthern

89.9–103.8

Sc12583_123864 - PsC7922p456

4.80

−0.58

16.21

LG3b

Seed iron conc. (ppm)

2012 Sutherland

90.7–96.8

Sc12583_123864 - PsC7922p456

4.04

−2.33

17.35

LG3b

Seed Protein conc. (%)

2010 Sutherland

117.2–117.5

PsC17621p214c

3.16

0.33

9.61

LG3C

Seed starch conc. (%)

2011 Rosthern

7.1–9.5

Sc3749_108190 - Sc2879_47145

3.40

0.40

7.06

LG3C

Seed starch conc. (%)

2011 Sutherland

7.1–9.5

Sc3749_108190 - Sc2879_47145

4.39

0.46

11.58

LG3C

Seed starch conc. (%)

2012 Sutherland

12.4–15.6

PsC14740p177 - Sc7592_10748

4.73

0.45

11.03

LG3c

Seed shape (1–5)

2011 Rosthern

13.8–16.3

PsC14740p177 - PsC6804p417

8.29

−0.22

22.14

LG3C

1000 seed weight (g)

2010 Sutherland

15.5–18.1

Sc15898_5876 - Sc5634_248952

14.51

−14.20

37.83

LG3C

1000 seed weight (g)

2012 Rosthern

15.5–18.1

Sc15898_5876 - Sc5634_248952

15.57

−18.12

40.02

LG3C

1000 seed weight (g)

2011 Rosthern

15.6–18.9

Sc15898_5876 - Sc3846_98653

11.69

−12.47

32.08

LG3c

Seed shape (1–5)

2012 Rosthern

15.7–17.9

Sc15898_5876 - Sc5634_248952

7.65

− 0.18

17.91

LG3c

Seed shape (1–5)

2011 Sutherland

15.9–17.8

Sc7592_10748 - Sc5634_248952

4.56

−0.15

14.03

LG3C

Seed starch conc. (%)

2012 Rosthern

16.9–17.3

PsC6804p417 - Sc7506_85661

3.76

0.45

8.00

LG3C

1000 seed weight (g)

2012 Sutherland

17.0–17.3

PsC6804p417 - Sc7506_85661

3.07

−5.17

5.73

LG3c

Seed shape (1–5)

2010 Rosthern

18.0–21.4

Sc7506_85661 - Sc1034_397114

8.57

−0.20

19.73

LG3c

Seed shape (1–5)

2012 Sutherland

18.3–21.0

Sc5634_248952 - Sc1034_397114

3.71

−0.13

8.82

LG3c

Seed shape (1–5)

2010 Sutherland

22.5–25.2

Sc5236_240350 - Sc3776_72623

8.30

−0.24

21.88

LG3C

1000 seed weight (g)

2010 Rosthern

29.1–32.8

PsC17990p348 - Sc5017_107595

11.38

−10.80

26.22

LG4

Acid detergent fibre (%)

2010 Rosthern

46.9–54.9

Sc14252_54211 - PsC9619p120

6.42

12.41

12.41

LG4

Acid detergent fibre (%)

2011 Sutherland

47.1–55.1

Sc14773_9078 - PsC9619p120

4.74

0.20

11.43

LG4

Yield (g/m2)

2012 Sutherland

55.4–57.3

PsC9619p120 - PsC8649p435

3.10

−24.70

9.68

LG4

Acid detergent fibre (%)

2011 Rosthern

55.4–57.7

PsC9619p120 - PsC8027p461

4.92

0.30

13.80

LG4

1000 seed weight (g)

2010 Rosthern

74.2–78.7

Sc11957_111590 - PsC17119p75

4.00

5.85

7.80

LG4

1000 seed weight (g)

2011 Sutherland

86.2–87.2

PsC2962p250 - Sc29_745213

3.05

7.08

6.80

LG4

Acid detergent fibre (%)

2010 Rosthern

112.4–115.6

Sc16937_64085 - Sc13643_109377

6.55

12.39

12.39

LG4

Neutral detergent fibre (%)

2011 Sutherland

114.0–117.7

PsC8606p327 - Sc3118_133217

5.97

−0.33

12.34

LG4

Neutral detergent fibre (%)

2011 Rosthern

121.0–124.6

PsC3839p347 - Sc6758_108549

5.84

−0.34

12.41

LG4

Acid detergent fibre (%)

2012 Rosthern

125.0–127.9

Sc6758_108549 - Sc15127_41344

6.22

−0.19

18.65

LG4

Neutral detergent fibre (%)

2012 Sutherland

125.0–127.9

PsC11200p246 - Sc15127_41344

6.95

−0.33

11.29

LG4

Neutral detergent fibre (%)

2012 Rosthern

125.1–128.1

PsC11200p246 - PsC6805p316

6.94

−0.36

14.47

LG4

Yield (g/m2)

2012 Rosthern

125.3–127.9

PsC11200p246 - Sc15127_41344

4.12

42.50

12.14

LG4

Yield (g/m2)

2010 Sutherland

164.1–164.4

PsC5648p575 - Sc14535_27663

3.02

35.90

7.72

LG4

1000 seed weight (g)

2010 Rosthern

171.5–174.8

PsC6387p181 - Sc10124_24989

6.84

7.89

13.98

LG4

1000 seed weight (g)

2010 Sutherland

190.1–192.2

Sc11207_89502 - Sc2978_155562

3.83

6.32

7.43

LG4

1000 seed weight (g)

2011 Rosthern

190.8–192.2

Sc1136_367986 - Sc2978_155562

3.05

5.91

7.26

LG5a

Seed dimpling (%)

2010 Rosthern

2.2–6.2

Sc8473_10944 - PsC12889p283

9.14

5.26

29.19

LG5a

Seed dimpling (%)

2010 Sutherland

2.2–6.2

Sc8473_10944 - PsC12889p283

8.85

6.94

27.10

LG5a

Seed dimpling (%)

2011 Sutherland

2.2–6.2

Sc8473_10944 - PsC12889p283

9.02

3.19

28.03

LG5a

Seed dimpling (%)

2012 Sutherland

2.3–6.3

Sc8473_10944 - PsC12889p283

9.53

5.05

28.71

LG5a

Seed dimpling (%)

2012 Rosthern

2.5–6.3

Sc8473_10944 - PsC12889p283

10.37

8.20

25.69

LG5a

Seed dimpling (%)

2011 Rosthern

2.6–6.2

PsC22556p240 - PsC12889p283

4.12

3.10

12.67

LG6

1000 seed weight (g)

2011 Rosthern

11.4–12.9

PsC16439p299 - Sc15567_7204

3.33

6.07

7.65

LG6

1000 seed weight (g)

2010 Rosthern

118.5–120.3

Sc5637_275649 - Sc2500_201045

3.75

−5.54

7.07

LG6

1000 seed weight (g)

2010 Sutherland

131.5–134.8

PsC25597p337 - Sc10413_115004

4.35

−6.84

8.76

LG6

1000 seed weight (g)

2012 Sutherland

132.0–134.0

Sc3067_13865 - Sc10413_115004

3.33

−4.31

6.43

LG7a

Seed shape (1–5)

2012 Sutherland

0–0.9

Sc634_50791 - PsC21074p390

6.29

0.17

15.70

LG7a

Seed zinc conc. (ppm)

2012 Rosthern

0–1.7

Sc634_50791 - Sc5630_137578

4.61

1.64

11.65

LG7a

Seed zinc conc. (ppm)

2010 Sutherland

0–1.8

Sc634_50791 - Sc9049_101804

5.85

1.61

11.41

LG7a

Neutral detergent fibre (%)

2011 Rosthern

0–1.8

Sc634_50791 - Sc9049_101804

3.63

0.24

6.40

LG7a

Yield (g/m2)

2010 Sutherland

0–1.9

Sc634_50791 - Sc9049_101804

5.58

−49.80

15.11

LG7a

Seed shape (1–5)

2011 Rosthern

0–1.9

Sc634_50791 - Sc9049_101804

6.48

−0.19

16.42

LG7a

Neutral detergent fibre (%)

2011 Sutherland

0–1.9

Sc634_50791 - Sc9049_101804

5.05

0.29

9.91

LG7a

Seed shape (1–5)

2010 Sutherland

0–2.0

Sc634_50791 - Sc9049_101804

7.87

0.22

20.62

LG7a

Seed starch conc. (%)

2011 Rosthern

0–2.0

Sc634_50791 - Sc9049_101804

8.39

−0.68

20.10

LG7a

Acid detergent fibre (%)

2011 Sutherland

0–2.0

Sc634_50791 - Sc9049_101804

4.95

0.19

11.27

LG7a

Seed shape (1–5)

2012 Rosthern

0.3–2.6

Sc634_50791 - Sc5048_78539

8.46

0.19

20.23

LG7a

Acid detergent fibre (%)

2011 Rosthern

0.5–2.5

PsC14542p181 - Sc5048_78539

5.15

0.15

14.53

LG7a

Yield (g/m2)

2012 Sutherland

2.7–5.1

Sc5048_78539 - Sc13836_25493

3.98

−36.70

12.53

LG7a

Seed starch conc. (%)

2012 Sutherland

5.2–8.0

Sc13836_25493 - PsC13063p113

6.60

−0.53

16.09

LG7a

Seed starch conc. (%)

2012 Rosthern

5.8–6.4

PsC17565p62 - PsC894p666

3.56

−0.28

7.58

LG7a

Seed starch conc. (%)

2010 Rosthern

5.9–6.6

PsC17565p62 - PsC6197p84

3.33

−0.34

10.82

LG7a

Seed zinc conc. (ppm)

2010 Rosthern

10.3–12.3

Sc1295_349656 - Sc3544_82453

3.67

0.75

6.34

LG7a

Yield (g/m2)

2011 Sutherland

15.6–16.8

Sc5607_100908 - PsC4676p597

3.10

−27.50

8.95

LG7a

Acid detergent fibre (%)

2012 Sutherland

17.2–20.5

Sc5607_100934 - Sc18622_41612

5.32

0.15

14.04

LG7a

Neutral detergent fibre (%)

2012 Sutherland

20.8–24.6

Sc18622_41612 - PsC5078p112

5.12

0.30

8.10

LG7b

Seed protein conc. (%)

2010 Sutherland

25.2–27.1

Sc20361_14817 - Sc3324_313865

3.31

−0.34

10.13

LG7b

Seed protein conc. (%)

2010 Rosthern

25.6–28.1

Sc20361_14817 - Sc3324_313865

3.88

−0.41

12.96

LG7b

Seed protein conc. (%)

2011 Sutherland

42.6–43.3

Sc8615_6507 - Sc986_91465

3.16

−0.32

9.82

LG7b

Seed protein conc. (%)

2012 Sutherland

86.5–87.0

PsC6994p243 - PsC6313p125

3.14

−0.31

9.28

  1. Details of QTLs that were identified on the same linkage group in at least 50% of the trials were only listed
  2. aAdditive effect. Any positive value of additive effect indicates that the trait alleles are from Carerra and the negative additive effect indicates the trait alleles are from CDC Striker
  3. bThis flanking marker represents the centre of this 0.3 cM QTL region
  4. cMycosphaerella resistance is measured as area under disease progress curve (AUDPC)
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BMC Plant Biology

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