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Table 5 Details of quantitative trait loci identified for different traits in PR-02 population in repeated tests

From: Construction of high-density linkage maps for mapping quantitative trait loci for multiple traits in field pea (Pisum sativum L.)

Linkage group Trait Station/year QTL interval (cM) Flanking markers LOD Add. effecta % phenotypic variance explained
LG1a Seed zinc conc. (ppm) 2011 Sutherland 22.0–31.7 Sc4286_279148 - Sc10863_119685 4.32 −0.77 12.72
LG1b Seed protein conc. (%) 2013 Sutherland 28.0–29.9 Sc7251_83132 - Sc2398_82962 5.00 −0.43 14.55
LG1b Seed protein conc. (%) 2013 Rosthern 28.1–29.9 Sc7251_83132 - Sc2398_82962 4.97 −0.43 15.85
LG2b Seed starch conc. (%) 2013 Sutherland 1.8–24.9 Psc16928p164 - Psc12448p512 5.54 0.49 21.03
LG2b Seed iron conc. (ppm) 2011 Sutherland 3.9–6.4 PsC3032p118 - Sc6182_10333 3.97 −1.00 12.55
LG2b Seed starch conc. (%) 2013 Rosthern 6.6–10.6 Sc6182_10333 - Sc6182_10844 5.53 0.49 21.00
LG3b 1000 seed weight (g) 2011 Sutherland 1.1–4.1 Psc5404p543 - Sc16130_61478 3.03 −4.96 6.31
LG3b Days to maturity 2011 Rosthern 2.0–5.9 PsC15242p262 - Sc14164_1954 4.46 1.73 6.97
LG3b Days to maturity 2011 Sutherland 14.9–22.2 PsC3603p449 - PsC2870p236 4.26 −0.378 7.75
LG3b Days to maturity 2011 Rosthern 15.8–18.1 Sc3211_41467 - Sc14719_40002 4.80 −1.35 22.87
LG3b Plant height (cm) 2011 Sutherland 33.8–50.1 Sc10386_31966 - Sc4095_91754 12.81 −3.99 30.09
LG3b Seed iron conc. (ppm) 2011 Rosthern 47.4–58.7 PsC14749p226 - Sc5214_31535 6.28 −1.03 20.72
LG3b Seed iron conc. (ppm) 2011 Sutherland 47.5–58.6 PsC14749p226 - Sc5214_31535 7.61 −1.47 26.67
LG3b 1000 seed weight (g) 2011 Rosthern 49.7–54.3 PsC14749p226 - Sc5624_75165 4.57 −6.84 11.62
LG3b Plant height (cm) 2011 Rosthern 69.9–83.1 PsC17487p80 - PsC17710p220 5.09 −2.37 17.7
LG3b Days to maturity 2012 Rosthern 70.0–91.3 PsC17487p80 - PsC7872p386 7.69 −0.49 24.92
LG3b Plant height (cm) 2012 Rosthern 70.0–91.3 PsC17487p80 - PsC7872p386 16.71 −1.88 41.54
LG3b Plant height (cm) 2012 Sutherland 73.2–91.6 PsC17487p80 - PsC7872p386 5.47 −1.10 18.17
LG3b Plant height (cm) 2011 Sutherland 88.5–106.2 Sc5836_42661 - PsC7220p181 8.10 −2.89 15.93
LG3b Seed zinc conc. (ppm) 2011 Rosthern 91.8–109.1 PsC7872p386 - PsC7220p181 13.71 1.22 25.83
LG4a Seed selenium conc. (ppm) 2011 Sutherland 20.1–35.2 PsC28982p67 - PsC20003p140 11.6 −0.13 18.76
LG4a Yield (g/m2) 2012 Rosthern 20.7–38.4 PsC16121p109 - Sc4155_71251 11.24 −38.24 31.23
LG4a Yield (g/m2) 2011 Sutherland 20.9–31.3 PsC16121p109 - PsC29043p181 22.31 −74.6 54.28
LG4a Seed protein conc. (%) 2013 Sutherland 24.8–25.8 PsC21191p166 - PsC10328p564 3.39 −0.33 10.23
LG4a Seed protein conc. (%) 2013 Rosthern 24.8–26.1 PsC16121p109 - PsC10328p564 3.37 −0.33 10.26
LG4b Seed iron conc. (ppm) 2011 Sutherland 2.3–3.4 Sc13744_115613 - PsC4914p436 3.34 0.94 11.14
LG5a Neutral detergent fibre (%) 2012 Sutherland 0–6.4 PsC20318p230 - PsC22556p240 5.50 −0.17 19.04
LG5a Neutral detergent fibre (%) 2013 Sutherland 6.4–19.1 PsC22556p240 - PsC23878p158 5.05 −0.28 16.22
LG5a Neutral detergent fibre (%) 2013 Rosthern 15.4–17.9 Sc11890_49833 - PsC13003p355 5.00 −0.28 16.41
LG5a Plant height (cm) 2012 Rosthern 18.3–25.9 PsC13003p355 - Psc5495p478 4.22 −0.8 8.02
LG5a Seed selenium conc. (ppm) 2011 Sutherland 19.8–31.4 PsC13003p355 - Sc8067_37186 3.51 0.07 8.39
LG5a Plant height (cm) 2012 Sutherland 20.7–26.0 PsC13003p355 - PsC5495p478 4.05 −0.91 12.32
LG5a Days to flowering 2012 Rosthern 25.1–26.6 Sc6136_87848 - Sc10102_65751 3.79 0.23 12.39
LG5a Days to flowering 2011 Rosthern 59.7–66.9 PsC12850p269 - Psc14118p303 3.54 0.20 10.38
LG5a Days to flowering 2013 Sutherland 60.2–68.2 PsC12850p269 - Psc14118p303 3.86 0.35 7.30
LG6 Seed iron conc. (ppm) 2011 Rosthern 0.2–3.0 Sc1444_325450 - PsC10309p393 3.37 0.75 10.33
LG6 Yield (g/m2) 2011 Sutherland 0.5–6.5 PsC1405p153 - Sc10272_102016 3.09 21.41 4.45
LG6 Seed zinc conc. (ppm) 2011 Rosthern 1.6–6.8 PsC1405p153 - Sc10272_102016 4.52 0.61 7.10
LG6 Seed zinc conc. (ppm) 2011 Rosthern 9.3–10.8 Sc10272_102494 - PsC16439p299 4.52 0.61 8.04
LG6 Yield (g/m2) 2012 Sutherland 19.3–24.4 PsC1446p690 - Sc2559_47919 3.54 −17.5 14.04
LG6 Yield (g/m2) 2012 Sutherland 31.9–38.4 Sc1034_360071 - PsC10745p88 4.73 −22.1 16.18
LG6 Days to flowering 2013 Sutherland 75.3–85.6 Sc2871_184315 - Sc16214_15919 19.0 −0.91 30.9
LG6 Days to flowering 2011 Rosthern 75.3–85.6 Sc2871_184315 - Sc16214_15919 9.16 −0.35 17.88
LG6 Days to flowering 2013 Rosthern 75.3–85.6 Sc2871_184315 - Sc16214_15919 10.63 −0.91 26.19
LG6 Days to flowering 2012 Sutherland 79.9–85.6 PsC11091p970 - Sc16214_15919 12.84 −0.96 47.9
LG6 Yield (g/m2) 2011 Rosthern 80.6–90.8 PsC11091p970 - Sc14597_144051 6.20 −26.7 11.82
LG6 Yield (g/m2) 2013 Rosthern 80.8–92.9 PsC11091p970 - Psc17032p91 7.96 −33.01 24.62
LG6 Yield (g/m2) 2013 Sutherland 81.2–92.8 PsC11091p970 - Psc17032p91 6.61 −33.01 19.38
LG6 Days to maturity 2013 Sutherland 82.1–93.0 PsC11091p970 _Psc17032p91 5.00 −0.69 16.63
LG6 Days to maturity 2011 Sutherland 82.6–92.9 PsC11091p970 - Psc17032p91 5.56 −0.49 10.6
LG6 Days to maturity 2013 Rosthern 82.6–92.9 PsC11091p970 - PsC17032p91 8.4 −0.69 33.38
LG6 Days to flowering 2011 Sutherland 87.9–97.3 Sc16214_15939 - PsC25597p337 5.29 −0.20 17.63
LG6 Days to maturity 2011 Rosthern 96.2–98.5 PsC18778p90 - Psc13143p353 3.19 −0.71 9.17
LG6 1000 seed weight (g) 2011 Rosthern 96.5–98.3 PsC18778p90 - Psc13143p353 3.58 −6.1 8.05
LG6 Days to maturity 2011 Sutherland 123.0–126.3 Psc11465p483 - PsC21695p164 8.19 −0.51 16.37
LG6 Yield (g/m2) 2011 Sutherland 123.4–130.5 PsC11465p483 - Sc13526_24967 3.26 −22.19 4.69
LG6 1000 seed weight (g) 2011 Sutherland 1.4–3.4 PsC21695p164 - Sc10011_183622 4.64 −6.89 11.03
LG7 Seed selenium conc. (ppm) 2011 Sutherland 11.0–12.5 Sc14293_122324 - Sc6387_110932 3.20 −0.06 7.14
LG7 Seed selenium conc. (ppm) 2011 Rosthern 14.7–19.5 Sc6387_110932 - PsC6555p155 3.10 −0.04 15.04
LG7 Neutral detergent fibre (%) 2013 Sutherland 40.43 - 52.31 PsC9328p99 - PsC11241p406 6.07 0.31 14.64
LG7 Acid detergent fibre (%) 2013 Sutherland 40.43 - 52.31 PsC9328p99 - PsC11241p406 8.36 0.23 28.08
LG7 Neutral detergent fibre (%) 2013 Rosthern 40.43 - 52.31 PsC9328p99 - PsC11241p406 3.90 0.24 10.03
LG7 Acid detergent fibre (%) 2013 Rosthern 40.43 - 52.31 PsC9328p99 - PsC11241p406 8.65 0.22 26.21
  1. Details of QTLs that were identified on the same linkage group in at least 50% of the trials were only listed
  2. aAdditive effect. Any positive value of additive effect indicates that the trait alleles are from Orb and the negative additive effect indicates the trait alleles are from CDC Striker