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Table 3 Characterization of SNP obtained in five populations by GBS after alignment with the switchgrass genome v. 4.1 and filtering

From: Genomic prediction accuracy for switchgrass traits related to bioenergy within differentiated populations

Parameter value
Ts:Tv ratio 1.183
1 bp indel 0.8%
tri- + tetra-allelic 3.7%
Average SNP Mbp− 1 14.84
Annotated coding 5118
aMissense 3275 (64%)
Silent 1740 (34%)
Nonsense 76 (1.4%)
introns 2216
3’UTR 786
5’ UTR 670
Total SNPs 19,342
  1. aMissense, silent, and nonsense were relative to reference AP13 genotype