Table 3 Characterization of SNP obtained in five populations by GBS after alignment with the switchgrass genome v. 4.1 and filtering
Parameter | value |
|---|---|
Ts:Tv ratio | 1.183 |
1Â bp indel | 0.8% |
tri- + tetra-allelic | 3.7% |
Average SNP Mbp− 1 | 14.84 |
Annotated coding | 5118 |
aMissense | 3275 (64%) |
Silent | 1740 (34%) |
Nonsense | 76 (1.4%) |
introns | 2216 |
3’UTR | 786 |
5’ UTR | 670 |
Total SNPs | 19,342 |