Table 3 Statistics of TypeI-Inositol polyphosphate5phosphatase1 protein structural predictions in G. max and G. soja (C score: Confidence score, TM score: Template Modeling score, RMSD: root mean square deviation)
Features | G. max | G. soja | |
|---|---|---|---|
Top 10 templates predicted by I-TASSER | 1i9yA, 1i9yA, 1i9zA, 4cmlA, 4cmnA, 1i9yA, 4cmlA, 4cmnA, 1i9yA, 1i9zA | 1i9yA, 1i9yA, 1i9zA, 4cmnA, 4cmnA, 1i9yA, 4cmlA, 2xswA, 1i9yA, 1i9zA | |
Model Evaluation data of predicted structures | C- score | −2.80 | −2.51 |
Expected TM score | 0.39 ± 0.13 | 0.42 ± 0.14 | |
Expected RMSD | 14.5 ± 3.7 | 13.8 ± 3.9 | |
Number of Decoys | 354 | 455 | |
Cluster Identity | 0.0158 | 0.0210 | |
Energy value (KJ/mole) of predicted protein models | before energy minimization | − 1148.840 | 190.541 |
after energy minimization | −17,465.256 | − 17,325.898 | |
Ramachandran Plot statistics (% residues) | Favored regions | 55.9 | 57.3 |
Additional region | 31.8 | 30.8 | |
Allowed regions | 5.9 | 6.9 | |
Disallowed regions | 6.3 | 5.1 | |