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Table 3 Trichome-related glabrous cotyledon genes in the hairy leaf AtGL3+ and ultra-hairy leaf K-5-8 lines relative to glabrous leaf B. napus cv. Westar

From: The biochemical composition and transcriptome of cotyledons from Brassica napus lines expressing the AtGL3 transcription factor and exhibiting reduced flea beetle feeding

ID Bin Name Description Expression relative to Westar
AtGL3 line K-5-8 line
ESTs common to both transgenic lines   
 bo5g002440 Positive initiation AN (ANGUSTIFOLIA); protein binding 5.39 1.63
 bra024875 " RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor 3.29 1.59
 bo9g070200 " RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor 1.49 0.73
 bra007766 " FDH, KCS10 (3-KETOACYL-COA SYNTHASE 10); acyltransferase 1.51 0.42
 bo1g116200 Positive branching DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton 1.53 1.46
 bra020572 " TUA6; structural constituent of cytoskeleton 1.54 0.73
 bra039648 " TUA6; structural constituent of cytoskeleton 1.48 0.55
 bo1g054880 " SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor 1.51 0.47
 bra009451 Multicellular trichomes SIM (SIAMESE); cyclin-dependent protein kinase inhibitor 1978.24 11.69
 bo9g178800 " SIM (SIAMESE); cyclin-dependent protein kinase inhibitor 935.76 7.64
 bra027928 Less developed unknown protein 1.45 0.42
 bo1g046580 " MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase 1.14 0.37
 bra026409 " MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase 1.13 0.35
 bo9g054590 " unknown protein 1.44 0.24
ESTs unique to the AtGL3+ line   
 bra033258 Positive initiation AN (ANGUSTIFOLIA); protein binding 14.72 NA
 bra017443 " RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor 1.47 NA
 bra029388 Distorted EMB3009 (embryo defective 3009); transferase/ transferase, transferring acyl groups 1.07E+301 NA
 bo7g097360 " EMB3009 (embryo defective 3009); transferase/ transferase, transferring acyl groups 1.05E+59 NA
 bra004054 Positive branching TPS6 | ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase 3.29 NA
 bo3g071760 " DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton 1.68 NA
 bra022356 " DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton 1.64 NA
 bo5g117040 " DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton 1.55 NA
 bra037560 " DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton 1.48 NA
 bra008705 Negative branching ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor 5.94 NA
 bo5g021100 Endoreduplication CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator 1.39 NA
 bo5g038710 Trichome size ATSAC1 (suppressor of actin 1); phosphatidylinositol-4,5-bisphosphate 5-phosphatase 7.73 NA
 bo6g027740 Less developed MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase 38.59 NA
ESTs unique to the K-5-8 line   
 bo8g115250 Positive initiation HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor NA 0.43
 bo8g067530 " HDG12 (HOMEODOMAIN GLABROUS 12); transcription factor NA 0.27
 bra015401 " HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor NA 0.13
 bo6g029470 Positive branching TPS6 | ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase NA 1.65
 bo6g107020 " TUA6; structural constituent of cytoskeleton NA 0.63
 bo9g022270 " PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor NA 0.57
 bra018825 " TUA6; structural constituent of cytoskeleton NA 0.53
 bra016164 Negative initiation MYBL2 (ARABIDOPSIS MYB-LIKE 2); DNA binding / transcription factor NA 1.56
 bo3g149420 " UPL3 | KAK (KAKTUS); ubiquitin-protein ligase | chr4:18041031-18049292 REVERSE' NA 0.68
 bo2g012520 Negative branching ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor NA 0.36
 bo3g010230 " ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor NA 0.29
 bo9g164230 " ATMIXTA | ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor NA 0.18
 bra024337 Trichome size HYS1 | CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) NA 1.94
 bo2g029050 " FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding /oxidoreductase NA 0.56
 bra020412 " FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding /oxidoreductase NA 0.41
 bo9g133540 " FLP1, YRE, CER3, WAX2 | CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding /oxidoreductase NA 0.20
  1. aCotyledon values are arranged from highest expression to lowest expression within each functional category using the K-5-8 line