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Table 1 Cotyledon genes (common to two hairy lines) with potential to impact host plant responses to flea beetles and diamondback moth

From: The biochemical composition and transcriptome of cotyledons from Brassica napus lines expressing the AtGL3 transcription factor and exhibiting reduced flea beetle feeding

    Fold change relative to Westar
Gene ID Sub-categories Description AtGL3 line K-5-8 linea
Metal Handling
 bo7g039050 general SBP3 (selenium-binding protein 3) 1.07E+301 1.07E+301
 bo9g123330 binding, chelation, storage NAS2 (NICOTIANAMINE SYNTHASE 2) 3.96E+08 3.92E+09
 bo4g040020 " ATSERAT2;1, SAT5, SAT1 (O-SERINE ACETYLTRANSFERASE 2;1) 8.99 352.70
 bra002851 " NAS2 | NAS2 (NICOTIANAMINE SYNTHASE 2) 47.80 77.58
 bra015594 " MT1C; copper ion binding 4.42 10.20
 bra009595 " MT2A, ATMT-K, ATMT-1 (METALLOTHIONEIN 2A) 3.23 7.38
 bo5g008330 " MT1C; copper ion binding 4.41 7.17
Wax
 bo8g102710 synthesis KCS4 (3-KETOACYL-COA SYNTHASE 4) 3.33 5.83
 bra033983 " YBR159, KCR1 | YBR159; ketoreductase/oxidoreductase 4.59 2.81
 bra004034 " CUT1, POP1, CER6, G2, KCS6 (3-KETOACYL-COA SYNTHASE 6) 29.07 2.58
 bo7g019710 " KCS9 (3-KETOACYL-COA SYNTHASE 9) 1.67 2.42
 bra024749 " CUT1, POP1, CER6, G2, KCS6 (3-KETOACYL-COA SYNTHASE 6) 2.83 1.51
Cell Wall
 bra011899 modification ATEXLA2, EXPL2, ATHEXP BETA 2.2 (EXPANSIN-LIKE A2) 9.17 12.64
 bra024848 " EXGT-A3, XTH27, hydrolase, xyloglucan:xyloglucosyl transferase 3.29 4.03
 bo3g018260 precursor synthesis UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) 4.72 18.03
 bra006722 " " 3.87 9.62
 bra021798 " ATCSLB03, ATCSLB3 cellulose synthase/ glycosyl transferase 6.43 5.18
 bo1g037390 " ATCSLG2 cellulose synthase/ glycosyl transferase 3.73 3.17
 bra016440 cell wall proteins unknown protein 8.59 101.30
 bo4g194100 " proline-rich extensin-like family protein 5.50E+04 11.24
 bra037731 " " 33328.67 7.21
 bra026268 " hydroxyproline-rich glycoprotein family protein 20.79 5.06
 bo1g051380 " " 9.65 4.97
 bra003200 degradation.mannan-xylose-arabinose-fucose PMR6 (powdery mildew resistant 6); pectate lyase 5.41E+12 190.90
 bra024089 " MERI5B, MERI-5, SEN4 (meristem-5); hydrolyzing glycosyl bonds 3.13 66.59
 bo4g108130 " pectinesterase family protein 6.87 43.88
 bra009234 " ATPGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); binding 44.74 37.33
 bo2g127040 " pectinacetylesterase, putative 3.30 19.53
 bra010038 " ATBXL1 (BETA-XYLOSIDASE 1); hydrolyzing O-glycosyl compounds 1.70 9.03
 bo2g013480 degradation.pectate lyases/polygalacturonases glycoside hydrolase family 28 protein 5.78 7.76
 bo6g058470 " PMR6 (powdery mildew resistant 6); pectate lyase 1.96E+05 4.92
Lignin
 bo3g024650 biosynthesis ATC4H, C4H, CYP73A5 (CINNAMATE-4-HYDROXYLASE) 2717.78 39.35
 bra036480 " HCT (SHIKIMATE/QUINATE HYDROXYCINNAMOYL COA-TRANSFERASE) 2.72 2.68
Flavonoids
 bra018364 dihydroflavonols UGT71D1 (UDP-GLUCOSYL TRANSFERASE 71D1) 7.75 12.33
 bra037386 " " 7.15 9.32
 bo9g003740 " " 65.69 6.15
Phenylpropanoids
 bra028893 phenylpropanoids transferase family protein 14.84 17.57
 bra029364 " NIC2 (NICOTINAMIDASE 2); catalytic nicotinamidase 5.46 8.84
 bo3g167180 " O-methyltransferase family 2 protein 10.07 8.41
 bo7g064020 " transferase family protein 12.06 4.93
Alkaloids
 bra003263 N misc. alkaloid-like strictosidine synthase family protein 416.91 3.94
 bo6g054230 " " 17.29 2.92
Cyanogenic glucosides
 bra014956 cyanase CYN (CYANASE); DNA binding / cyanate hydratase/ hydro-lyase 7.06 6.21
  1. aCotyledon values are arranged from highest expression to lowest expression within each functional category using the K-5-8 line.