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Table 2 SNPs associated with resistance to Ch3 isolate, revealed by GLM analysis and arranged according p-values

From: Identification of 50 K Illumina-chip SNPs associated with resistance to spot blotch in barley

# Marker Chr Physical map position (bp) Genetical map position (cM) p-value Alleles MAF, %
1 JHI-Hv50k-2016-157070 3H 17,888,495 na 6.04E-08* C/G C(0.19)
2 JHI-Hv50k-2016-156842 3H 17,559,189 na 1.20E-06* A/G A(0.18)
3 JHI-Hv50k-2016-156999 3H 17,817,242 na 5.71E-11* A/C A(0.25)
4 JHI-Hv50k-2016-156329 3H 16,375,436 na 3.26E-09* G/A G(0.25)
5 JHI-Hv50k-2016-157182 3H 17,954,351 na 3.67E-09* T/A T(0.25)
6 JHI-Hv50k-2016-156387 3H 16,420,851 na 1.45E-08* C/A C(0.10)
7 JHI-Hv50k-2016-156336 3H 16,375,848 na 1.05E-07* A/T A(0.11)
8 BOPA1_3355–605 2H na na 1.19E-07* C/A C(0.19)
9 SCRI_RS_153880 2H na 59.3 1.19E-07* T/C T(0.19)
10 SCRI_RS_206529 2H na 60.5 1.19E-07* A/G A(0.19)
11 BOPA2_12_11504 2H 520,773,185 57.0 1.19E-07* A/G A(0.19)
12 BOPA2_12_30108 2H 556,024,085 59.3 1.19E-07* A/C A(0.19)
13 JHI-Hv50k-2016–98667 2H 559,662,446 na 1.19E-07* A/G A(0.19)
14 SCRI_RS_141789 2H 551,217,066 59.3 1.19E-07* A/C A(0.19)
15 JHI-Hv50k-2016-156833 3H 17,558,292 na 1.73E-07* T/A T(0.29)
16 SCRI_RS_83731 2H na 57.0 1.84E-07* T/G T(0.21)
17 SCRI_RS_162917 2H 517,229,083 57.2 1.84E-07* A/G A(0.21)
18 SCRI_RS_233449 2H 520,779,376 57.0 1.84E-07* G/A G(0.21)
19 JHI-Hv50k-2016-155569 3H 15,256,329 na 4.30E-07* A/G A(0.14)
20 JHI-Hv50k-2016-158003 3H 18,788,405 na 5.36E-07* G/A G(0.27)
21 SCRI_RS_97417 3H 15,255,540 12.1 1.35E-06* C/T C(0.34)
22 SCRI_RS_186769 2H na 57.4 1.35E-06* G/C G(0.22)
23 BOPA1_2634–2228 2H 520,264,176 na 1.35E-06* C/A C(0.22)
24 BOPA1_5160–268 2H 520,778,105 na 1.35E-06* G/A G(0.22)
25 SCRI_RS_132839 2H 524,447,113 57.0 1.35E-06* A/G A(0.22)
26 SCRI_RS_136740 2H 524,817,496 57.2 1.35E-06* A/C A(0.22)
27 SCRI_RS_191136 2H 520,437,064 57.0 1.35E-06* T/C T(0.22)
28 BOPA2_12_30179 2H na 56.4 2.15E-06 A/G A(0.19)
29 JHI-Hv50k-2016–92202 2H 309,655,073 na 2.96E-06 T/C T(0.21)
30 BOPA2_12_10035 2H 463,231,068 56.7 3.10E-06 G/A G(0.19)
31 SCRI_RS_161169 2H 483,288,774 56.7 3.10E-06 G/A G(0.19)
32 BOPA1_5254–1845 2H 175,163,708 na 5.42E-06 G/A G(0.18)
33 SCRI_RS_109192 2H 175,053,470 na 5.42E-06 G/T G(0.18)
34 JHI-Hv50k-2016-226122 4H 645,489 na 6.20E-06 A/G A(0.37)
35 JHI-Hv50k-2016-155951 3H 15,469,647 na 8.49E-06 T/A T(0.30)
36 JHI-Hv50k-2016-153016 3H 7,847,727 na 9.22E-06 A/G G(0.10)
37 JHI-Hv50k-2016-445854 7H 10,393,349 na 9.28E-06 A/G G(0.48)
38 JHI-Hv50k-2016-17526 1H 32,102,667 na 9.88E-06 G/A A(0.42)
39 SCRI_RS_162708 7H 56,674,116 47.9 9.88E-06 A/G G(0.29)
40 JHI-Hv50k-2016-159556 3H 24,223,023 na 1.60E-04 G/A G(0.41)
41 BOPA2_12_31179 1H 449,874,128 58.4 3.54E-04 C/G C(0.13)
  1. 1–27 (underlined bold): SNPs, which are significant according Bonferroni multiple test correction at 5% (p < 1.8302E-6).28–39 (bold): suggestive SNPs. MAF – Minor allele frequency. Chr – chromosome, na – not available. Genetic map positions are given according Morex / Barke iSelect map (http://bioinf.hutton.ac.uk/iselect/app/)