Prediction and analysis of three gene families related to leaf rust (Puccinia triticina) resistance in wheat (Triticum aestivum L.)

Table 4 Candidate genes less than 100 Kb to rust resistance markers for designated rust genes in the ABC, NLR and START families

Designated rust gene	Chromosome	Marker	Ensembl gene^a	Family^b	Distance^c
SrND643	4AL	gwm350	4AL_7AFBA6334	NLR (CNL)	293
Lr37/Sr38/Yr17	2AS	Ventriup-LN2	2AS_71B82606A	START (START)	503
Sr26	6AL	BE518379	6AL_91A76CBCC	ABC (I)	561
Lr34/Yr18/Bdv1/Pm38/Ltn1	7DS	cssfr1	7DS_25B02BA46^d	ABC (Gpdr)	1212
Lr34/Yr18/Bdv1/Pm38/Ltn1	7DS	cssfr2	7DS_25B02BA46^d	ABC (Gpdr)	2189
Sr33	1DS	Xcfd15	1DS_9EABB4B7A	NLR (CNL)	9523
Lr46/Yr29/Pm39/Ltn	1BL	Xwmc719	1BL_33D479058	NLR (CNL)	28,712
Sr13	6AL	CD926040	6AL_22F03E292	NLR (CNL)	29,257
SrND643	4AL	wmc219	4AL_7E627E983	NLR (CNL)	99,528

^aThe ‘Traes_’ prefix in each gene identifier removed
^bAbbreviations: ABC, ATP-binding cassette; NLR, nucleotide-binding site /leucine-rich repeat (NB-LRR or NBS-LRR); START, steroidogenic acute regulatory (StAR) protein-related lipid transfer domain. The subgroup names were added in the parentheses. CNL: coiled-coil NBS-LRR; Gpdr: pleiotrpoic drug resitance class in G subfamily
^cPhysical distance in the number of bases between the gene start (5′ transcription start site or TSS) and marker end (marker located upstream of a gene) or the gene end (3′ transcription termination site or TTS) and marker start (marker located downstream of a gene)
^dTraes_7DS_25B02BA46 represents the cloned Lr34 gene (cf. Figure 2)

ISSN: 1471-2229