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Table 3 Trimers and long OGs down-regulate gene sets associated with organelle organization, photosynthesis and metabolic processes

From: Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

Gene set Identity Size NES P-value
RNA_METABOLIC_PROCESS GO:0016070 13 -2.78 0
CHLOROPLAST_PART GO:0044434 17 -2.69 0
PIGMENT_BIOSYNTHETIC_PROCESS GO:0046148 6 -2.66 0
NCRNA_METABOLIC_PROCESS GO:0034660 6 -2.66 0
PYRUVATE_METABOLIC_PROCESS GO:0006090 11 -2.66 0
ISOPRENOID_METABOLIC_PROCESS GO:0006720 11 -2.66 0
ISOPENTENYL_DIPHOSPHATE_BIOSYNTHETIC_PROCESS GO:0009240 11 -2.65 0
CELLULAR_CARBOHYDRATE_METABOLIC_PROCESS GO:0044262 22 -2.65 0
ISOPENTENYL_DIPHOSPHATE_BIOSYNTHETIC_PROCESS, MEVALONATE-INDEPENDENT_PATHWAY GO:0019288 11 -2.64 0
PIGMENT_METABOLIC_PROCESS GO:0042440 6 -2.64 0
PLASTID_PART GO:0044435 17 -2.64 0
CELLULAR_GLUCAN_METABOLIC_PROCESS GO:0006073 6 -2.64 0
PLASTID GO:0009536 28 -2.63 0
ISOPENTENYL_DIPHOSPHATE_METABOLIC_PROCESS GO:0046490 11 -2.61 0
CELLULAR_POLYSACCHARIDE_METABOLIC_PROCESS GO:0044264 6 -2.60 0
GLUCAN_BIOSYNTHETIC_PROCESS GO:0009250 6 -2.59 0
POLYSACCHARIDE_METABOLIC_PROCESS GO:0005976 6 -2.59 0
GLYCERALDEHYDE-3-PHOSPHATE_METABOLIC_PROCESS GO:0019682 11 -2.58 0
CHLOROPLAST GO:0009507 27 -2.58 0
  1. The 20 most significantly down-regulated gene sets based on the GO database are presented, as determined by a GSEA on the GenePattern platform using the combined trimer and long OG gene expression data