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Table 2 Trimers and long OGs induce gene sets associated with phytohormones, stress and defense signaling

From: Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

Gene set ID Size NES P-value
RESPONSE_TO_ORGANIC_SUBSTANCE GO:0010033 59 2.11 0.00
OXYLIPIN_METABOLIC_PROCESS GO:0031407 9 2.10 0.00
OXYLIPIN_BIOSYNTHETIC_PROCESS GO:0031408 9 2.05 0.00
JASMONIC_ACID_METABOLIC_PROCESS GO:0009694 8 1.92 0.00
JASMONIC_ACID_BIOSYNTHETIC_PROCESS GO:0009695 8 1.90 0.00
RESPONSE_TO_CARBOHYDRATE_STIMULUS GO:0009743 27 1.84 0.00
CELLULAR_RESPONSE_TO_CHEMICAL_STIMULUS GO:0070887 33 1.78 0.02
RESPONSE_TO_CHITIN GO:0010200 26 1.78 0.02
FATTY_ACID_BIOSYNTHETIC_PROCESS GO:0006633 12 1.75 0.02
CELLULAR_RESPONSE_TO_STIMULUS GO:0051716 49 1.74 0.02
IMMUNE_SYSTEM_PROCESS GO:0002376 49 1.70 0.03
CELLULAR_RESPONSE_TO_STRESS GO:0033554 45 1.67 0.03
RESPONSE_TO_ETHYLENE_STIMULUS GO:0009723 14 1.66 0.03
IMMUNE_RESPONSE GO:0006955 49 1.64 0.03
RESPONSE_TO_FUNGUS GO:0009620 32 1.64 0.03
INNATE_IMMUNE_RESPONSE GO:0045087 49 1.63 0.02
RESPONSE_TO_CYCLOPENTENONE GO:0010583 11 1.61 0.04
PROGRAMMED_CELL_DEATH GO:0012501 26 1.61 0.04
PLANT-TYPE_HYPERSENSITIVE_RESPONSE GO:0009626 26 1.61 0.03
HOST_PROGRAMMED_CELL_DEATH_INDUCED_BY_SYMBIONT GO:0034050 26 1.60 0.04
  1. The 20 most significantly up-regulated gene sets based on the GO database are presented, as determined by a GSEA on the GenePattern platform using the combined trimer and long OG gene expression data