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Table 2 Trimers and long OGs induce gene sets associated with phytohormones, stress and defense signaling

From: Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

Gene set

ID

Size

NES

P-value

RESPONSE_TO_ORGANIC_SUBSTANCE

GO:0010033

59

2.11

0.00

OXYLIPIN_METABOLIC_PROCESS

GO:0031407

9

2.10

0.00

OXYLIPIN_BIOSYNTHETIC_PROCESS

GO:0031408

9

2.05

0.00

JASMONIC_ACID_METABOLIC_PROCESS

GO:0009694

8

1.92

0.00

JASMONIC_ACID_BIOSYNTHETIC_PROCESS

GO:0009695

8

1.90

0.00

RESPONSE_TO_CARBOHYDRATE_STIMULUS

GO:0009743

27

1.84

0.00

CELLULAR_RESPONSE_TO_CHEMICAL_STIMULUS

GO:0070887

33

1.78

0.02

RESPONSE_TO_CHITIN

GO:0010200

26

1.78

0.02

FATTY_ACID_BIOSYNTHETIC_PROCESS

GO:0006633

12

1.75

0.02

CELLULAR_RESPONSE_TO_STIMULUS

GO:0051716

49

1.74

0.02

IMMUNE_SYSTEM_PROCESS

GO:0002376

49

1.70

0.03

CELLULAR_RESPONSE_TO_STRESS

GO:0033554

45

1.67

0.03

RESPONSE_TO_ETHYLENE_STIMULUS

GO:0009723

14

1.66

0.03

IMMUNE_RESPONSE

GO:0006955

49

1.64

0.03

RESPONSE_TO_FUNGUS

GO:0009620

32

1.64

0.03

INNATE_IMMUNE_RESPONSE

GO:0045087

49

1.63

0.02

RESPONSE_TO_CYCLOPENTENONE

GO:0010583

11

1.61

0.04

PROGRAMMED_CELL_DEATH

GO:0012501

26

1.61

0.04

PLANT-TYPE_HYPERSENSITIVE_RESPONSE

GO:0009626

26

1.61

0.03

HOST_PROGRAMMED_CELL_DEATH_INDUCED_BY_SYMBIONT

GO:0034050

26

1.60

0.04

  1. The 20 most significantly up-regulated gene sets based on the GO database are presented, as determined by a GSEA on the GenePattern platform using the combined trimer and long OG gene expression data