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Table 2 RNA editing site conditions in higher plant chloroplast genomes

From: Abundant RNA editing sites of chloroplast protein-coding genes in Ginkgo biloba and an evolutionary pattern analysis

  Moss Hornwort Fern Gymnosperm Angiosperm
  Pp Af Ac Gb Pt Ct Os Zm Ta Pa Cs At Gh Ab Sl Nt
Total editing sites 2 942 349 255 26 36 21 26 26 44 32 34 54 35 36 37
C to U 2 509 314 255 26 36 21 26 26 44 32 34 54 35 36 37
U to C 0 433 35 0 0 0 0 0 0 0 0 0 0 0 0 0
1st codon edits 0 165 9 63 0 0 0 0 0 0 0 0 0 0 0 0
2nd codon edits 1 546 237 174 19 30 20 24 24 38 29 29 47 33 33 34
3rd codon edits 0 28 21 14 0 0 0 1 1 0 0 0 1 1 1 1
Silent edits 0 28 21 16 0 0 0 1 0 2 0 0 1 0 0 0
New starts 1 5 21 2 0 1 1 1 1 1 1 1 1 2 2 2
New stops 0 3 3 7 2 1 0 0 0 0 0 0 0 0 0 0
Untranslated region 1 9 ND ND ND ND 1 1 ND 2 0 2 ND 0 0 0
  1. Taxa abbreviations shown above are: Pp: Physcomitrella patens, Af: Anthoceros formosae, Ac: Adiantum capillus-veneris, Gb: Ginkgo biloba, Pt: Pinus thungergii, Ct: Cycas taitungensis, Os: Oryza sativa, Zm: Zea mays, Ta: Triticum aestivum, Pa: Phalaenopsis aphrodite, Cs: Cucumis sativus, At: Arabidopsis thaliana, Gh: Gossypium hirsutum, Ab: Atropa belladonna, Sl: Solanum lycopersicum and Nt: Nicotiana tabacum; ND stand for No available data. If there are no special instructions, then these abbreviations apply to Additional file 1: Table S1 and Additional file 2: Table S2
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