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Table 4 21 DEGs with InDels prone to cause loss of function or codon change

From: Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)

Gene ID

InDelaLOF

Codon-change

log2(S/F)

Annotation

Allele from sterile buds

SIN_1025190

c.1151_1151 + 1insCGa

p.Gly385fs

10.09

SCP18_ARATH Serine carboxypeptidase-like 18

SIN_1017245

c.435dupAa

p.Leu146fs

3.51

F3PH_ARATH Flavonoid 3’-monooxygenase

SIN_1018350

c.889_890insTa

p.Thr297fs

1.39

IPT_HUMLU Adenylate isopentenyltransferase

SIN_1013325

c.507_507 + 1insTTTGAAGATa

1.28

AB22G_ARATH ABC transporter G family

SIN_1022131

c.465 + 1_465 + 2insAa

 

1.54

DHI1L_XENTR Hydroxysteroid 11-beta-dehydrogenase 1

SIN_1007649

c.886-2_886-1insTa

 

1.47

BGAL_MALDO Beta-galactosidase

SIN_1001108

c.934-2_934-1insCCa

 

4.33

E13B_WHEAT Glucan endo-1,3-beta-glucosidase

SIN_1010915

c.855dupT

p.Pro286fs

4.20

R1B14_SOLDE late blight resistance protein

SIN_1025700

c.318_319insCTGGAA

p.V106_A107insLE

−1.00

SCL32_ARATH Scarecrow-like protein 32

SIN_1005818

c.597_599delAAG

p.Arg200del

−1.49

HMGB9_ARATH High mobility group B protein 9

Allele from fertile buds

SIN_1005818

c.394 + 2delTa

 

−1.49

HMGB9_ARATH High mobility group B protein 9

SIN_1004626

c.1008delGa

p.Gln336fs

−1.63

Y9955_DICDI serine/threonine-protein kinase

SIN_1009714

c.1245 + 1_1245 + 9delGTTGGTTTCa

−1.11

BRCA1_ARATH (BREAST CANCER SUSCEPTIBILITY)

SIN_1008339

c.698 + 1delGa

 

−1.21

MARH1_MOUSE E3 ubiquitin-protein ligase

SIN_1026641

c.750-2delAa

 

−1.25

PGLR2_PLAAC Exopolygalacturonase (Fragment)

SIN_1014879

c.1048-2_1048-1insAa

 

−2.01

Y5713_ARATH PI-PLC X domain-containing protein

SIN_1021763

c.1005_1006delCA

p.His335fs

−1.56

FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1

SIN_1022317

c.712_713dupGT

p.Trp240fs

−1.59

PP323_ARATH Pentatricopeptide repeat protein

SIN_1009152

c.1653_1654insC

p.Ser552fs

−1.08

Y5241_ARATH Probable receptor-like protein kinase

SIN_1004703

c.74delC

p.Ala25fs

1.30

AMERL_ARATH AMMECR1 domain protein

SIN_1019529

c.18_20dupAGG

p.Gly7dup

1.54

DUF3774 Wound-induced protein

  1. a means InDel may cause Loss of function (LOF), as predicted by SnpEff. See Additional file 7: Table S8 for full information