Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Rocheta, Margarida; Coito, João L.; Ramos, Miguel J. N.; Carvalho, Luísa; Becker, Jörg D.; Carbonell-Bejerano, Pablo; Amâncio, Sara

doi:10.1186/s12870-016-0911-4

Table 3 Down-regulated genes

From: Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Variety/Treatment	Name	Log₂	ID	Annotation
TR_W	LipGDSL ^a	−3.95	XM_002272934	GDSL esterase/lipase
TR_W	VviEXPA18	−3.92	VIT_217s0053g00990	expansin
TR_W	CML ^a	−3.73	VIT_218s0001g01630	ef hand family protein
TR_W	THI1	−3.49	VIT_210s0116g00530	thiazole biosynthetic enzyme
TR_W	PG2	−3.47	VIT_201s0127g00850	probable polygalacturonase non-catalytic subunit jp650-like
TR_L	Clmd ^a	−3.58	XM_002277463	putative calcium-binding protein CML19
TR_L	ERF5-1	−3.58	VIT_216s0013g00950	ethylene-responsive transcription factor 5
TR_L	NUDT17	−3.56	VIT_217s0000g02050	Nudix hydrolase 17
TR_L	BAP2 ^a	−3.19	VIT_215s0048g02070	BON1-associated protein (BAP2)
TR_L	ASP	−3.17	VIT_218s0001g07340	aspartyl protease
TR_H	STZ	−4.38	VIT_218s0001g09230	zinc finger protein ZAT10-like
TR_H	WRKY46	−4.15	VIT_215s0046g01140	WRKY transcription factor 46
TR_H	SRS2	−3.87	VIT_216s0013g00300	ATP-dependent DNA helicase
TR_H	ERF-1	−3.86	VIT_202s0234g00130	ethylene-responsive transcription factor 1a
TR_H	CYP707A1	−3.85	VIT_202s0087g00710	abscisic acid 8-hydroxylase
FTR	SCPL7_SCPL18	−4.04	VIT_203s0091g01290	serine carboxypeptidase-like 18-like
FTR	PRP-I ^a	−3.64	VIT_202s0154g00320	14 kDa proline-rich protein
FTR	GA20OX1	−3.32	VIT_216s0022g02310	gibberellin 20-oxidase
FTR	TT4	−3.32	VIT_205s0136g00260	Chalcone synthase
FTR	SCPL16_SCPL17	−3.18	VIT_203s0088g00260	serine carboxypeptidase-like 18-like
TN_W	THI1	−3.49	VIT_210s0116g00530	thiazole biosynthetic enzyme
TN_W	Pepd ^a	−1.54	VIT_218s0001g00510	prolyl oligopeptidase-like protein
TN_L	HSP17	−4.83	VIT_213s0019g02760	17 kDa class i heat shock protein
TN_L	ERF5-1	−3.62	VIT_216s0013g00950	ethylene-responsive transcription factor 5
TN_L	HSP17II	−3.43	VIT_204s0008g01500	17 kDa class ii heat shock protein
TN_L	Clmd ^a	−3.58	XM_002277463	putative calcium-binding protein CML19
TN_L	HSP18	−3.41	VIT_213s0019g02770	18 kDa class i heat shock protein
TN_H	SsP ^a	−4.36	VIT_200s0586g00030	stem-specific protein
TN_H	XTR6	−3.30	VIT_211s0052g01260	probable xyloglucan endotransglucosylase hydrolase protein
TN_H	JAZ8	−3.16	VIT_210s0003g03810	protein tify 5a-like
TN_H	NUDT17	−3.56	VIT_217s0000g02050	Nudix hydrolase 17
TN_H	VviVQ3	−2.87	VIT_202s0025g01280	WRKY transcription factor 41
FTN	PRP-I ^a	−3.64	VIT_202s0154g00320	14 kDa proline-rich protein
FTN	PYL4	−3.41	VIT_213s0067g01940	abscisic acid receptor pyl4
FTN	PRP-36 ^a	−3.37	XM_003631687	36.4 kDa proline-rich protein
FTN	PME61	−3.17	VIT_205s0062g01160	pectinesterase family protein
FTN	ZIP2	−3.16	VIT_206s0004g05070	zinc transporter

^a Genes whose short name was attributed by the authors to facilitate writing. The five most down-regulated genes in Trincadeira (TR) and Touriga Nacional (TN) individual stress treatments (IS): Water deficit (W); High light radiation (L); Heat (H); and in the Field: Trincadeira (FTR), Touriga Nacional (FTN). Name, expression value (in log₂ gene expression), ID from 12x_v2.1 (http://genomes.cribi.unipd.it/grape/) or NCBI accession. Genes highlighted in bold represent genes that are shared between treatments and genes highlighted in underline represent genes shared between varieties, in Table 3 and between Table 2 and 3

Back to article page

ISSN: 1471-2229

Contact us

General enquiries: journalsubmissions@springernature.com

BMC Plant Biology

Contact us