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Table 2 Number of genes that were expressed in each treatment, as identified by GO categories

From: Hydrogen cyanamide breaks grapevine bud dormancy in the summer through transient activation of gene expression and accumulation of reactive oxygen and nitrogen species

ROS-/NO-related genes GO category Gene family No. of gene up/down regulated
P HC PHC
ROS-related genes
ROS-generating genes GO:0043167
ion binding
Respiratory burst oxidase homolog protein (VvRBOH) 0/0 0/1 0/2
GO:0004601
peroxidase activity
Peroxidase (VvPOD) 10/1 10/14 15/10
ROS-scavenging genes GO:0016209
antioxidant activity
Alpha-dioxygenase 1 (VvDOX1) 1/0 1/0 0/0
Glutathione peroxidase (VvGPX) 0/0 0/1 1/1
Catalase isozyme 1-like (VvCAT) 0/0 0/2 0/2
Cytosolic ascorbate peroxidase (VvAPX) 0/0 0/1 0/2
Superoxide dismutase [Fe], chloroplastic (VvFSD) 0/0 0/0 1/1
Alternative oxidase 2, mitochondrial (VvAOX2) 0/0 1/0 1/0
ROS-specific transcription factors GO:00037000
transcription factor
Heat Stress transcription factor (VvHSF) 0/1 2/2 3/6
Ethylene response element binding factor (VvERF) 4/3 8/6 8/9
WRKY transcription factor (VvWRKY) 1/0 9/4 7/7
NO-related gene
NO-scavenging GO:0005488
Binding
Hemoglobin-2 (VvHB2) 0/0 1/0 1/0
  1. These were significantly up/down regulated genes related to ROS/NO metabolism in grapevine buds treated with P, HC and PHC following the GO categories by ErmineJ analysis