RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain

Tiwari, Gopal Ji; Liu, Qing; Shreshtha, Pushkar; Li, Zhongyi; Rahman, Sadequr

doi:10.1186/s12870-016-0881-6

Table 3 Differential expression of genes in the metabolism of Fatty acid and TAG biosynthesis

From: RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain

Feature ID	Gene abbreviation	DAA	Weighted proportions fold change	P-value	RNAi/WT mean fold change	RNAi/WT mean log2 fold change
LOC_Os09g32760	FATA	10	−1.1	0.54	0.93	−0.11
LOC_Os09g32760	FATA	15	−1.62	*0.04	0.53	−0.91
LOC_Os09g32760	FATA	20	−1.28	0.22	0.80	−0.32
LOC_Os01g69080	SAD2	10	−1.04	0.76	0.98	−0.03
LOC_Os01g69080	SAD2	15	−1.57	*0.02	0.55	−0.85
LOC_Os01g69080	SAD2	20	−1.35	*0.01	0.75	−0.41
LOC_Os04g31070	SAD5	10	−1.31	0.2	0.78	−0.37
LOC_Os04g31070	SAD5	15	−1.88	*2.17E-4	0.46	−1.12
LOC_Os04g31070	SAD5	20	−1.01	0.92	1.01	0.01
LOC_Os05g25310	LACS	10	−1.3	0.13	0.78	−0.36
LOC_Os05g25310	LACS	15	−1.45	*0.04	0.59	−0.76
LOC_Os05g25310	LACS	20	−1.37	0.23	0.74	−0.43
LOC_Os01g70090	ECH1	10	−1.11	0.56	0.91	−0.13
LOC_Os01g70090	ECH1	15	−1.64	^a0.03	0.53	−0.93
LOC_Os01g70090	ECH1	20	1.06	0.79	1.11	0.15
LOC_Os02g48560	FAD2	10	−2.1	*2.02E-3	0.48	−1.05
LOC_Os02g48560	FAD2	15	−2.05	*9.15E-6	0.43	−1.22
LOC_Os02g48560	FAD2	20	−1.77	*0.04	0.59	−0.75
LOC_Os06g22080	DGAT2	10	−1.31	0.45	0.76	−0.39
LOC_Os06g22080	DGAT2	15	−1.71	*7.73E-3	0.51	−0.98
LOC_Os06g22080	DGAT2	20	−1.16	0.28	0.89	−0.17
LOC_Os02g50174	Caleosin	10	1.52	0.27	1.56	0.64
LOC_Os02g50174	Caleosin	15	−1.33	*0.04	0.65	−0.63
LOC_Os02g50174	Caleosin	20	−1.97	*5.02E-3	0.51	−0.97
LOC_Os03g12230	Caleosin	10	−1.14	0.42	0.88	−0.18
LOC_Os03g12230	Caleosin	15	−1.58	*6.60E-3	0.55	−0.86
LOC_Os03g12230	Caleosin	20	−1.27	0.5	0.81	−0.31
LOC_Os04g32080	STEROLEOSIN	10	−1.36	0.42	0.73	−0.45
LOC_Os04g32080	STEROLEOSIN	15	−1.36	*0.03	0.64	−0.65
LOC_Os06g22080	STEROLEOSIN	20	−1.16	0.28	0.89	−0.17
LOC_Os02g49410	LEC1	10	−1.23	0.42	0.81	−0.30
LOC_Os02g49410	LEC1	15	−1.66	*3.91E-3	0.53	−0.92
LOC_Os02g49410	LEC1	20	−1.44	0.12	0.71	−0.49

*represents significant p-values

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