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Table 2 Proteins differentially expressed between resistant and susceptible tomato cultivars

From: Comparative proteomic analysis provides novel insight into the interaction between resistant vs susceptible tomato cultivars and TYLCV infection

aSpot no. bAccession number cProtein name dZT/ZC dJT/JC
Up-regulated proteins
 Spot5 gi|460372520 Oxygen-evolving enhancer protein 1 2.21* ± 0.44 10.57* ± 0.52
 Spot10 gi|100380 Ribulose bisphosphate carboxylase activase 3.25* ± 0.44 5.57* ± 0.43
 Spot41 gi|350535160 Wound-inducible carboxypeptidase precursor 3.62* ± 0.30 5.27* ± 0.22
 Spot42 gi|350535160 Wound-inducible carboxypeptidase precursor 2.72* ± 0.19 6.05* ± 0.30
 Spot54 gi|350536267 Subtilisin-like protease precursor 4.17* ± 0.29 14.46* ± 0.40
 Spot55 gi|460381101 28 kDa ribonucleoprotein 2.17* ± 0.70 2.05* ± 0.25
 Spot60 gi|460399143 Glycine dehydrogenase (decarboxylating) 4.02* ± 0.25 5.51* ± 0.19
 Spot61 gi|460399143 Glycine dehydrogenase (decarboxylating) 6.81* ± 0.38 5.09* ± 0.21
 Spot63 gi|170458 Threonine deaminase, partial 5.90* ± 0.09 7.29* ± 0.29
 Spot64 gi|170458 Threonine deaminase, partial 5.28* ± 0.62 2.96* ± 0.28
 Spot65 gi|170458 Threonine deaminase, partial 4.35* ± 0.03 7.62* ± 0.14
 Spot68 gi|460389504 Protein disulfide-isomerase-like 3.51* ± 0.28 3.39* ± 0.22
 Spot69 gi|460395973 Heat shock protein 83 19.73* ± 0.24 9.53* ± 0.23
 Spot77 gi|590715109 Transducin family protein / WD-40 repeat family protein isoform 1 2.87* ± 0.03 12.76* ± 0.11
 Spot81 gi|350536897 Cytosolic ascorbate peroxidase 1 6.03* ± 0.16 5.85* ± 0.07
 Spot85 gi|251895 Polyphenol oxidase 15.32* ± 0.10 10.49* ± 0.42
 Spot86 gi|460397526 Heme-binding protein 2 4.29* ± 0.25 4.41* ± 0.18
Down-regulated proteins
 Spot1 gi|407970998 Chlorophyll a-b binding protein 4 0.22* ± 0.13 0.18* ± 0.09
 Spot3 gi|460405507 Chlorophyll a-b binding protein 8 0.46* ± 0.03 0.36* ± 0.13
 Spot8 gi|723739979 Ribulose bisphosphate carboxylase/oxygenase activase 0.07* ± 0.05 0.16* ± 0.01
 Spot11 gi|488453358 Ribulose 1,5-bisphosphate carboxylase 0.04* ± 0.01 0.01* ± 0,01
 Spot12 gi|488453358 Ribulose 1,5-bisphosphate carboxylase 0.06* ± 0.01 0.02* ± 0.01
 Spot13 gi|488453358 Ribulose 1,5-bisphosphate carboxylase 0.05* ± 0.01 0.05* ± 0.01
 Spot14 gi|488453358 Ribulose 1,5-bisphosphate carboxylase 0.09* ± 0.01 0.04* ± 0.01
 Spot15 gi|1293000 Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 0.10* ± 0.05 0.06* ± 0.01
 Spot17 gi|21069067 Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit 0.02* ± 0.01 0.09* ± 0.08
 Spot20 gi|92087012 Ribulose bisphosphate carboxylase large chain OS 0.09* ± 0.01 0.01* ± 0.01
 Spot21 gi|92087012 Ribulose bisphosphate carboxylase large chain OS 0.08* ± 0.01 0.01* ± 0.01
 Spot22 gi|460375527 Ferredoxin--NADP reductase, leaf-type isozyme 0.42* ± 0.10 0.14* ± 0.02
 Spot27 gi|460372959 Peptidyl-prolyl cis-trans isomerase CYP38 0.26* ± 0.05 0.15* ± 0.04
 Spot28 gi|469517896 Glyceraldehyde-3-phosphate dehydrogenase 0.46* ± 0.03 0.44* ± 0.13
 Spot29 gi|460414390 ATP synthase delta chain 0.38* ± 0.05 0.11* ± 0.03
 Spot37 gi|460373820 ATP synthase gamma chain 0.09* ± 0.01 0.05* ± 0.01
 Spot39 gi|350535679 Cytosolic NADP-malic enzyme 0.48* ± 0.07 0.49* ± 0.20
 Spot43 gi|350534564 26S protease regulatory subunit 6A homolog 0.20* ± 0.07 0.30* ± 0.04
 Spot46 gi|460415494 Eukaryotic initiation factor 4A-2 0.35* ± 0.02 0.37* ± 0.02
 Spot47 gi|460399092 Eukaryotic initiation factor 4A-2 0.49* ± 0.22 0.22* ± 0.05
 Spot57 gi|460404838 Adenosylhomocysteinase 0.21* ± 0.06 0.45* ± 0.19
 Spot74 gi|1168191.1 14-3-3 protein 4 OS 0.10* ± 0.04 0.11* ± 0.05
 Spot75 gi|3041662 14-3-3 protein 3 0.21* ± 0.04 0.08* ± 0.02
 Spot76 gi|460405902 Plasma membrane-associated cation-binding protein 1 0.20* ± 0.04 0.34* ± 0.04
Opposite expression proteins
 Spot31 gi|460397188 Thiamine thiazole synthase 2.25* ± 0.07 0.23* ± 0.17
 Spot33 gi|723747143 Aconitate hydratase 0.26* ± 0.02 5.77* ± 0.85
 Spot45 gi|460400419 Elongation factor G 0.47* ± 0.01 3.29* ± 0.39
 Spot48 gi|460391817 Elongation factor TuB 2.45* ± 0.23 0.34* ± 0.03
 Spot51 gi|460391351 Cell division cycle protein 48 homolog 0.38* ± 0.04 5.90* ± 0.81
 Spot62 gi|460370413 Glycine dehydrogenase 3.33* ± 0.16 0.07* ± 0.02
 Spot66 gi|460398434 Cysteine synthase 2.11* ± 0.22 0.33* ± 0.04
 Spot83 gi|460373807 Putative lactoylglutathione lyase 0.44* ± 0.21 2.05* ± 0.24
  1. aNumbering corresponds to the 2-DE in Fig. 3
  2. bAccession number from the NCBI nr database
  3. cNames of the proteins obtained via the MASCOT software from the NCBI nr database
  4. dProtein abundance ratio of Treatment/Control tomato cultivars, with each value representing the mean value ± SD of three biological replicates
  5. Indicates significant (more than 2.0-foldor less than 0.50-fold) difference between control and treatment tomato cultivars