Table 2 Predicted binding site of miR156 and miR157 on sequences of candidate target genes in SPL family
Candidate gene | Start region number in mRNA sequence | mRNA sequence of predicted binding site area | Amino acid sequence of corresponding binding site area | Stop region number in amino sequence |
|---|---|---|---|---|
Bra027478 (SPL2) | 922 | GAUGGUGCUCUCUCUCUUCUGUCAAAU | QDLDGALSLLSNSTAW | 316 |
Bra033671 (SPL2) | 841 | GAUGGUGCUCUCUCUCUUCUGUCAAAU | QDLDGALSLLSNSTPW | 293 |
Bra004363 (SPL6) | 631 | ACUUGUGCUUGCUCUCUUCUGUCAGCU | PRSTCACSLLSAQSQQ | 223 |
Bra038324 (SPL6) | 673 | ACUUGUGCUCUCUCUCUUCUGUCAGCU | PRSTCALSLLSAQSQQ | 237 |
Bra016891 (SPL9) | 736 | AACUGUGCUCUCUCUCUUCUGUCAAAU | GDSNCALSLLSNPHQ | 257 |
Bra004674 (SPL9) | 739 | AACUGUGCUCUCUCUCUUCUGUCAAAC | SVTNCALSLLSNPHQP | 259 |
Bra010949 (SPL10) | 991 | UACAGUGCUCUCUCUCUUCUGUCAACG | QDFYSALSLLSTSSDS | 343 |
Bra030041 (SPL10) | 1015 | UACAGUGCUCUCUCUCUUCUGUCAACG | QDFYSALSLLSTSSDS | 351 |
Bra030040 (SPL11) | 1067 | CACCGUGCUCUCUCUCUUCUGUCAACU | QEFHRALSLLSTSSSD | 369 |
Bra032822 (SPL11) | 994 | CACCGUGCUUUCUCUCUUCUGUCAACU | QDFHRAFSLLSTSSGP | 344 |
Bra022766 (SPL13) | 844 | GAUUGCGCUCUCUCUCUUCUGUCAUCA | HDSDCALSLLSSSSSH | 294 |
Bra003305 (SPL15) | 562 | AGCUGUGCUCUCUCUCUUCUGUCAAAC | TDSSCALSLLSNYTNP | 201 |
Bra014599 (SPL15) | 550 | AGCUGUGUUCUCUCUCUUCUGUCAAAC | TDSSCVLSLLSNSNTT | 196 |