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Table 5 List of candidate genes close to the significant markers determined based on function or expression pattern

From: Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam

QTL ID

Chr

Position of QTL

Trait(s)

Gene in rice

Gene in Arabidopsis

Function

References

q48

1

2710978-2880907

NR_T

Os01g05820

no

Specifically expressed in lateral root initiation zone

[25]

q48

1

2710978-2880907

NR_T

Os01g06010

no

Specifically expressed in lateral root initiation zone

[25]

q48

1

2710978-2880907

NR_T

Os01g06060

no

Specifically expressed in root cap

[25]

q73

1

5851606

DWB60, DRW

Os01g10900

At04g18640

Arabidopsis MRH1, root hair development

[44]

q73

1

5851606

DWB60, DRW

Os01g11010

no

Specifically expressed in lateral root initiation zone

[25]

q84

1

6404307

DRP

Os01g11860

no

Specifically expressed in root cap

[25]

q49

1

10299033

NR_T

Os01g18360

no

OsIAA4, crown roots formation in response to auxin

[34]

q36

1

28579082

NCR

Os01g49690

At01g50370

Arabidopsis FYPP1, post transductional, PIN protein regulation

[32]

q50

1

42706214

NR_T

Os01g73700

no

Specifically expressed in root cap

[25]

q50

1

42706214

NR_T

Os01g73720

no

Specifically expressed in root cap

[25]

q66

2

5015093

DW2040

Os02g09760

no

Specifically expressed in root cap

[25]

q64

2

25990556

DW0020

Os02g43 120

no

Specifically expressed in root cap

[25]

q74

2

30762847

DWB60

Os02g50372

no

Candidate gene for a root mass at depth QTL

[45]

q38

2

31652149

NCR

Os02g51710

At04g39730

Arabidopsis PLAT1, regulation of lateral root development

[41]

q59

3

35166421

THK

Os03g63970

At05g51810

OsGA20ox1, underlies a QTLs for early vigor

[47]

q51

5

16205923-16458100

NR_T

Os05g27920

At05g58440

Arabidopsis SNX2, endocellular transport of PIN2

[33]

q60

6

4 649 357

THK

Os06g09280

At01g26370

Arabidopsis RID1, root development

[46]

q76

6

15 865 171

DWB60

Os06g27980

At03g05390

Specifically expressed in root cap

[25]

q42

7

474 875

NCR

Os07g01820

no

OsMADS15, crown roots development

[39, 40]

q61

7

15 424 576

THK

Os07g26740

no

OsRR7, cytokinin signaling

[49, 57]

q61

7

15 424 576

THK

Os07g26740

no

Specifically expressed in lateral root initiation zone

[25]

q53

7

22174085-22175036

NR_T

Os07g37010

At04g03270

Arabidopsis CYCLIN D6;1 lateral root initiation

[38]

q71

12

1 185 335

DW4060

Os12g03110

no

Arabidopsis MIF1, root development

[43]

q71

12

1 185 335

DW4060

Os12g03150

At01g08810

Arabidopsis MYB60, root development

[42]

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BMC Plant Biology

ISSN: 1471-2229

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