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Table 4 QTLs common across traits for the three panels

From: Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam

QTLs

Chr

Position

Nb ass.

LLGHT

TIL

DEPTH

MRL

NCR

NR_T

THK

DW0020

DW2040

DW4060

DWB60

DRW

RDW

SDW

PDW

SRP

DRP

R_S

A. Whole panel

q33

1

146 251

3

   

*

      

*

     

(*)

 

q83

1

2 173 691

2

   

(*)

            

*

 

q66

2

5 015 093

2

        

*

   

(*)

     

q8

3

27 657 195

2

 

*

  

*

             

q67

6

4 021 017

4

        

*

(*)

 

(*)

(*)

     

q24

6

4 127 010

5

       

(*)

(*)

**

 

*

*

     

q76

6

14 008 461

6

    

**

  

*

  

*

(*)

*

 

(*)

   

q79

6

16 912 708

3

         

(*)

 

*

(*)

     

q15

7

18 507 925

3

           

(*)

 

*

*

   

q16

8

27 413 965

2

             

*

(*)

   

q43

11

5 272 788

2

    

*

  

(*)

          

q45

11

8 972 097

9

 

(*)

  

***

  

*

*

  

(*)

*

(*)

*

  

*

q31

11

22 579 249

2

  

**

(*)

              

q32

12

7 681 309

2

  

**

(*)

              

B. Indica subpanel

q73

1

5 851 606

3

  

(*)

       

**

*

      

q84

1

6 404 307

2

       

*

   

(*)

    

*

 

q65

4

30 438 406

2

       

*

        

(*)

 

q69

6

4 127 010

3

         

(*)

 

*

(*)

     

q41

6

14 126 219

3

    

*

  

(*)

    

(*)

     

q68

6

17 005 559

3

        

*

(*)

 

(*)

      

q82

6

21 716 314

2

               

*

*

 

q3

8

4 413 495

2

*

     

(*)

           

q45

11

8 972 097

6

    

**

  

(*)

(*)

  

(*)

*

 

(*)

   

C. Japonicasubpanel

q72

1

2 678 840

2

          

*

     

(*)

 

q48

1

2 710 978

2

     

*

            

q40

5

7 422 947

2

 

(*)

  

*

             

q70

10

11 589 746

3

         

*

 

*

(*)

     
  1. A whole panel; B indica subpanel; C japonica subpanel
  2. Chr chromosome, Nb ass. number of associations, LLGTH longest leaf length, TIL number of tillers, SDW shoot dry weight, DEPTH deepest point reached by roots, MRL maximum root length, NCR number of crown roots, NR_T number of crown root per tiller, THK root thickness, DW0020 root mass in the 00–20 cm segment, DW2040 root mass in the 20–40 cm segment, DW4060 root mass in the 40–60 cm segment, DWB60 root mass below 60 cm, DRW deep root mass (<40 cm) weight, RDW root dry weight, PDW plant dry weight, SRP shallow root proportion (0–20 cm), DRP deep root proportion (<40 cm), R_S root to shoot ratio
  3. (*): P < 1e-03; *: P < 1e-04; **: P < 1e-05; ***: P < 1e-06
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BMC Plant Biology

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