Fig. 1
From: Functional and evolutionary analyses of the miR156 and miR529 families in land plants
Alignment and phylogeny of SPLs containing the miR156/miR529-response element. a Alignments of the 25-nt miR156/529-response element were done using ClustalW (http://www.phytozome.net/). Black color denotes conserved nucleotides. b Rooted ML phylogenetic tree depicts the relationship between SPLs containing the miR156/529-response element from representative species. The numbers indicate branch support. Left numbers, posterior probability branch support. Right numbers, aLRT branch support (see Methods). “-”, indicates that a particular branch is not observed in Bayesian or maximum-likelihood trees. Blue line comprises moss SPLs and green line encompasses monocot and eudicot SPLs. c Target sites for miR156 and miR529 in A. thaliana SPL9 and SPL15 and A. lyrata SPL transcripts. At, Arabidopsis thaliana; Al, Arabidopsis lyrata; Th, Thellungiella halophila; Vv, Vitis vinifera; Sl, Solanum lycopersium; Md, Malus domestica; Fa, Fragaria ananassa; Pt, Populus trichocarpa; Gm, Glycine max; Mt, Medicago truncatula; Pont, Poncirus trifoliata; Am, Antirrhinum majus; Rc, Ricinus communis; Zm, Zea mays; Os, Oryza sativa; Bd, Brachypodium distachyon; Aqc, Aquilegia coerulea; Pp, Physcomitrella patens. Accession numbers are given in Additional file 1