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Table 3 Single nucleotide polymorphism (SNP) markers significantly (P < 0.001) associated with stem rust resistance at two growth phases (HA and SM) using mixed linear model (MLM)

From: Genome-wide association study on stem rust resistance in Kazakh spring barley lines

Marker Phase Chr. cM P R2 Allele MAF, % Effect
SCRI_RS_216088 HA 1H 122,2 6.1764E-4 0.13839 T/C C(0.12) C(1.09)
BOPA1_7370-818 HA 6H 63,5 2.9592E-4 0.15583 G/A A(0.14) A(1.18)
SCRI_RS_152841 HA 6H 63,5 2.9592E-4 0.15583 A/C C(0.14) A(−1.18)