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Table 1 Proteomic adjustment and functions in the cold acclimation of Rsch and Cvi

From: Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

Functional Category Arabidopsis Accession Relative contribution to accession-specific cold response [%]
Protein synthesis Rsch 65.59
Cvi 79.47
Protein degradation Rsch 5.81
Cvi 1.83
Calvin cycle Rsch 4.54
Cvi 0.34
Light reactions Rsch 4.01
Cvi 0.34
TCA Rsch 2.76
Cvi 0.57
Amino acid synthesis Rsch 2.23
Cvi 1.72
Not assigned Rsch 1.61
Cvi 0.92
Photorespiration Rsch 1.40
Cvi -
Redox Rsch 1.23
Cvi 0.46
Protein folding Rsch 1.17
Cvi 0.57
Glycolysis Rsch 1.00
Cvi 0.23
Lipid metabolism Rsch 1.00
Cvi 0.23
Nucleotide metabolism Rsch 0.95
Cvi -
OPP Rsch 0.91
Cvi -
Stress Rsch 0.72
Cvi 5.50
Gluconeogenesis Rsch 0.65
Cvi -
Secondary metabolism Rsch 0.61
Cvi 0.23
S-assimilation Rsch 0.40
Cvi -
Protein targeting Rsch 0.33
Cvi 0.46
mETC Rsch 0.32
Cvi 0.46
DNA synthesis Rsch 0.27
Cvi -
C1 metabolism Rsch 0.26
Cvi -
Major CHO metabolism Rsch 0.26
Cvi -
Tetrapyrrole synthesis Rsch 0.26
Cvi 1.61
Transport Rsch 0.23
Cvi -
Misc. Rsch 0.20
Cvi -
N-Metabolism Rsch 0.20
Cvi -
Co-factor and vitamin metabolism Rsch 0.13
Cvi 0.69
Signalling Rsch 0.13
Cvi 0.34
Amino acid degradation Rsch 0.12
Cvi -
Minor CHO metabolism Rsch 0.12
Cvi -
Cell cycle Rsch 0.09
Cvi -
Protein assembly/Cofactor ligation Rsch 0.09
Cvi 0.11
RNA Rsch 0.09
Cvi 3.56
Protein PTM Rsch 0.07
Cvi -
Biodegradation of xenobiotics Rsch 0.06
Cvi -
Protein activation Rsch 0.06
Cvi 0.23
Hormone metabolism Rsch 0.04
Cvi -
Cell organisation Rsch 0.03
Cvi -
Metal handling Rsch 0.03
Cvi -
Cell division Rsch 0.01
Cvi -
  1. All listed categories represent protein functions and their relative portion to all interactions which were identified by the STRING database analysis and which were found to be affected after the cold acclimation process (see Fig. 8)