Function category(a) | Protein annotation(b) | Accession no.(c) | Protein mass (Da)(d) | Number of unique spectra(e) | Expression level (RPKM)(f) | ||||
---|---|---|---|---|---|---|---|---|---|
S1 | S2 | S3 | S1 | S2 | S3 | ||||
Hormone synthesis and transport | |||||||||
 | ethylene-forming-enzyme-like dioxygenase | Unigene1601 | 7294.74 | 1 | 1 | 1 | 40.79 | 39.57 | 29.88 |
auxin-induced protein PCNT115 | Unigene35781 | 7591 | 10 | 2 | 4 | - | - | - | |
auxin conjugate hydrolase | Unigene62418 | 15754.03 | 2 | 2 | 5 | 31.34 | 24.86 | 16.44 | |
auxin conjugate hydrolase | Unigene66297 | 18462.26 | 3 | 4 | 3 | 14.39 | 57.75 | 14.66 | |
auxin-induced protein | Unigene33790 | 7048.87 | 6 | 3 | 6 | - | - | - | |
auxin-induced protein | Unigene29960 | 6562.45 | 2 | 1 | 1 | - | - | - | |
auxin-induced-related/indole-3-acetic acid induced-related-like | Unigene70406 | 25322.62 | 2 | 0 | 0 | 9.56 | 15.51 | 13.71 | |
auxin binding protein 1 | Unigene66527 | 21392.72 | 1 | 0 | 0 | - | - | - | |
auxin conjugate hydrolase | Unigene28944 | 4178.08 | 1 | 0 | 0 | 37.82 | 34.91 | 19.87 | |
auxin efflux carrier | Unigene68037 | 23205.64 | 1 | 0 | 0 | 42.66 | 13.21 | 5.53 | |
auxin efflux carrier family protein | Unigene72169 | 49455.3 | 1 | 0 | 0 | - | - | - | |
Gibberellin-regulated protein GA | Unigene10067 | 11170.06 | 38 | 29 | 43 | - | - | - | |
brassinosteroid biosynthetic protein LKB | Unigene62672 | 17576.9 | 2 | 11 | 5 | 311.10 | 206.03 | 49.91 | |
Gravity stimulation | |||||||||
 | ABC transporter ABCE.2 | Unigene72502 | 69066.7 | 39 | 23 | 26 | 84.41 | 82.15 | 87.00 |
ABC transporter family protein | Unigene21711 | 5989.96 | 8 | 6 | 1 | - | - | - | |
white-brown-complex ABC transporter family | Unigene18576 | 49021.47 | 2 | 4 | 3 | 25.91 | 37.09 | 16.94 | |
ABC transporter family protein | Unigene70598 | 35095.19 | 2 | 2 | 1 | 75.21 | 68.28 | 80.76 | |
multidrug/pheromone exporter MDR family ABC transporter family | Unigene62432 | 16133.34 | 1 | 0 | 0 | 62.54 | 31.35 | 10.29 | |
PDR-type ABC transporter 2 | Unigene71859 | 44479.44 | 2 | 0 | 0 | 48.56 | 188.56 | 91.96 | |
ABC transporter family protein | Unigene69124 | 18228.19 | 2 | 0 | 0 | 64.31 | 47.34 | 35.95 | |
ATNAP6 (NON-INTRINSIC ABC PROTEIN 6); protein binding/transporter | Unigene71274 | 36264.21 | 1 | 0 | 0 | - | - | - | |
ABC transporter family protein | Unigene65236 | 19643.19 | 1 | 0 | 0 | - | - | - | |
 | DnaJ protein | Unigene63710 | 16714.22 | 5 | 5 | 9 | - | - | - |
 | DNAJ heat shock N-terminal domain-containing protein | Unigene69504 | 29786.75 | 2 | 0 | 0 | 22.64 | 11.06 | 12.10 |
 | DNAJ heat shock family protein | Unigene61156 | 13833.69 | 1 | 0 | 0 | - | - | - |
 | microtubule-associated protein MAP65-1a | Unigene71866 | 45884.12 | 0 | 0 | 1 | 94.44 | 122.33 | 209.65 |
 | microtubule-associated protein | Unigene71117 | 33626.74 | 0 | 0 | 1 | - | - | - |
 | heat shock protein 70-3 | Unigene69094 | 27928.34 | 8 | 8 | 5 | 256.72 | 227.57 | 51.51 |
 | heat shock protein 70 | Unigene65006 | 18141.33 | 13 | 19 | 13 | 149.25 | 184.87 | 64.85 |
 | heat shock 70 kDa protein mitochondrial | Unigene77 | 44585.2 | 73 | 35 | 49 | 97.49 | 75.41 | 38.98 |
 | heat shock protein 70 | Unigene64820 | 18289.48 | 20 | 18 | 29 | - | - | - |
 | Heat shock 70 kDa protein mitochondrial | Unigene22321 | 5492.85 | 22 | 20 | 24 | - | - | - |
 | heat shock protein 90 | Unigene71426 | 41188.91 | 20 | 15 | 14 | 396.06 | 249.15 | 117.10 |
 | heat shock protein 90 | Unigene70349 | 34936.08 | 41 | 34 | 17 | 270.06 | 242.44 | 89.72 |
 | heat shock protein 60 | Unigene19291 | 13460.84 | 20 | 28 | 20 | - | - | - |
 | heat shock 70 kDa protein mitochondrial | Unigene69299 | 18064.06 | 15 | 7 | 8 | 138.07 | 147.68 | 63.71 |
 | heat shock protein 83 | Unigene69604 | 31674.36 | 4 | 1 | 13 | 3.26 | 10.30 | 23.60 |
 | heat shock protein binding protein | Unigene72153 | 46912.47 | 3 | 6 | 4 | 100.77 | 96.78 | 101.63 |
 | peroxisomal small heat shock protein ACD31.2 | Unigene55006 | 7984.84 | 6 | 9 | 13 | - | - | - |
Light and mechanical stimulus | |||||||||
 | vacuolar H + −ATPase B subunit | Unigene58237 | 12477.4 | 63 | 66 | 70 | - | - | - |
vacuolar H + −ATPase B subunit | Unigene70168 | 23795.16 | 32 | 21 | 22 | - | - | - | |
V-H(+)-ATPase subunit A | Unigene57183 | 12256.11 | 63 | 54 | 51 | - | - | - | |
vacuolar proton-ATPase subunit-like protein | Unigene72042 | 53725.55 | 23 | 5 | 3 | 114.45 | 79.93 | 63.00 | |
vacuolar H + −ATPase A1 subunit isoform | Unigene22140 | 5891.07 | 26 | 10 | 23 | - | - | - | |
vacuolar (H+)-ATPase G subunit | Unigene66176 | 12282.34 | 6 | 4 | 3 | - | - | - | |
plasma membrane H + −ATPase | Unigene66682 | 10032.22 | 2 | 14 | 5 | 70.23 | 61.12 | 46.70 | |
autoinhibited H+ ATPase | Unigene71289 | 31534.9 | 3 | 2 | 2 | 96.02 | 100.12 | 66.26 | |
plasma membrane H+ ATPase | Unigene18749 | 33429.66 | 3 | 0 | 0 | 67.84 | 54.27 | 67.79 | |
plasma membrane Ca2 + −ATPase | Unigene58047 | 12779.62 | 1 | 0 | 0 | 28.12 | 10.97 | 10.64 | |
autoinhibited calcium ATPase | Unigene18942 | 20451.6 | 1 | 0 | 0 | 11.23 | 11.63 | 30.39 | |
plasma membrane H + −ATPase | Unigene59696 | 13366.89 | 2 | 0 | 0 | 87.35 | 99.89 | 62.04 | |
peroxidase | Unigene54700 | 11344.53 | 77 | 51 | 54 | 162.21 | 201.85 | 140.32 | |
peroxidase | Unigene57343 | 11907.84 | 66 | 72 | 94 | - | - | - | |
cytosolic ascorbate peroxidase | Unigene49105 | 9691.83 | 53 | 43 | 54 | - | - | - | |
peroxidase | Unigene70700 | 29953.04 | 43 | 52 | 31 | 291.66 | 397.48 | 55.60 | |
extensin peroxidase | Unigene46836 | 8747.6 | 31 | 31 | 34 | - | - | - | |
peroxidase 17 | Unigene72081 | 36015.01 | 4 | 15 | 75 | 5.25 | 29.97 | 54.32 | |
glutathione peroxidase | Unigene63014 | 13139.73 | 10 | 7 | 12 | - | - | - | |
peroxidase | Unigene71860 | 35645.07 | 7 | 2 | 2 | 174.21 | 111.26 | 59.73 | |
peroxidase 30 | Unigene28971 | 6729.43 | 3 | 1 | 5 | 348.59 | 269.03 | 79.47 | |
peroxidase precursor | Unigene48043 | 9252.78 | 3 | 12 | 6 | 49.16 | 38.76 | 5.94 | |
peroxidase 1 precursor | Unigene61708 | 14791.6 | 5 | 6 | 5 | - | - | - | |
peroxidase 1 precursor | Unigene42563 | 8357.1 | 7 | 2 | 8 | - | - | - | |
peroxidase | Unigene26422 | 6290.16 | 1 | 3 | 4 | - | - | - | |
Calcium related | |||||||||
 | CAM5 (calmodulin 5); calcium ion binding | Unigene60884 | 6420.92 | 20 | 20 | 22 | - | - | - |
calcium-binding protein | Unigene15783 | 6641.1 | 4 | 4 | 4 | - | - | - | |
endoplasmic reticulum-type calcium-transporting ATPase 4 | Unigene71807 | 46699.82 | 4 | 7 | 5 | 80.84 | 75.27 | 72.45 | |
OST1 (open stomata 1); calcium-dependent protein serine/threonine kinase | Unigene3574 | 19012.44 | 2 | 1 | 1 | - | - | - | |
calcium-binding EF hand family protein | Unigene16448 | 44795.08 | 4 | 4 | 4 | 35.58 | 32.99 | 18.99 |