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Table 2 Phenotypic-expression correlation for 25 genes with significant cis- and trans-eQTL regulated by the major lamina shape QTL locus on linkage group X

From: Genetical genomics of Populus leaf shape variation

P. trichocarpa Gene Model cis/trans eQTL Correlation Lamina Length Correlation Lamina Width Correlation Lamina Length/Width Ratio Ath Ortholog Ath Ortholog Annotation
Potri.010G152600 cis −0.2354195 −0.3668554 0.25168267 AT1G10630 ATARFA1F; GTP binding/phospholipase activator/protein binding
estExt_Genewise1_v1.C_LG_X0900 cis 0.28153168 0.22276079 0.12428305 AT2G03420 similar to expressed protein
estExt_Genewise1_v1.C_LG_X1905 cis −0.1180535 −0.2092655 0.16315263 AT5G05840 similar to unknown protein
Potri.010G146900 cis −0.2057423 −0.2864154 0.15937637 AT5G49480 ATCP1 (CA2 + −BINDING PROTEIN 1); calcium ion binding
Potri.010G144500 cis −0.1709655 −0.2330248 0.09520016 AT3G66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
Potri.010G115500 cis −0.1655205 −0.239631 0.13854495 AT1G71110 similar to unknown protein
eugene3.00101684 cis −0.0327462 −0.1340572 0.22250948 AT1G79270 ECT8 (evolutionarily conserved C-terminal region 8)
eugene3.00101873 cis 0.13606338 0.00904373 0.27538385 AT2G25770 similar to unknown protein
Potri.010G085300 trans −0.1625601 −0.2031862 0.095351 AT3G22600 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
fgenesh4_pg.C_LG_X001101 cis −0.1932028 −0.2426184 0.10447822 AT1G18390 protein kinase family protein
fgenesh4_pg.C_LG_X001267 cis −0.2074094 −0.2653902 0.10578893 AT3G14630 CYP72A9 (cytochrome P450)
Potri.010G120500 cis 0.27906541 0.1749712 0.21085259 AT1G68220 similar to unknown protein
grail3.0022009901 cis 0.27753008 0.20094372 0.15049532 AT4G00170 vesicle-associated membrane family protein/VAMP family protein
Potri.010G189300 cis −0.0907817 −0.1946685 0.22753633 AT3G11210 GDSL-motif lipase/hydrolase family protein
gw1.X.1611.1 cis −0.0336113 −0.1425979 0.24313545 AT5G05460 hydrolase
Potri.010G184700 cis 0.03487584 −0.0635483 0.25117987 AT4G35920 MCA1 (MID1-COMPLEMENTING ACTIVITY 1)
gw1.X.2067.1 cis 0.20184048 0.06762258 0.30451177 AT3G11420 fringe-related protein
Potri.010G119300 cis 0.18423729 0.21675814 −0.0307313 AT1G15080 LPP2
gw1.X.558.1 cis −0.2016639 −0.2470379 0.10097016 AT4G02080 ATSAR2
gw1.X.613.1 cis −0.152675 −0.2248164 0.13504918 AT1G56430 nicotianamine synthase
Potri.010G149500 cis 0.17168568 0.0563584 0.20768151 AT3G06510 SFR2 (SENSITIVE TO FREEZING 2); hydrolase
Potri.010G179600 trans 0.01835356 0.14446327 −0.246553 AT1G65470 FAS1
eugene3.212260001 trans −0.2032587 −0.2235336 −0.0071332 AT4G27570 glycosyltransferase family protein
fgenesh4_pg.C_scaffold_44000104 trans −0.0999934 −0.205086 0.29000845   No Hits
fgenesh1_pg.C_LG_IX000767 trans −0.183402 −0.2330726 0.09782444   No Hits